Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0777 | ATGGAAAACGCGGAGGGAATGAAGCCATCAGCTACAAACAATTGCCATACTGATGGCGGAACAGACACTGTTGAAGTTCAATTCTCAGAATTGTGTCAGAATGGTTTACATCTGGATGAGAATTGTTGTAATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCAAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCATTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAAAATTCAGAGAGTTCACATCAGGGAGCTGAGAACAATAGCTTCACTTTATGCCACATATTGAGAATTTGCAAGCTGAATATTGTGGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTGTTGAGTAGTCTCTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGCTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAATCAGCTATATCCTGCCCTACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCGTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTCTGGTTTCCATTTTGGCTATTTTAATTCTTCATGTTCCCGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTTGTTAAGAAAGGCGGAAAGGGAGTGGACCTGCTTGGATCACTTTGTAATGTCTATGACACATCAGAGGAAGAACTGAGGGAAGTGATGGAAAAGGCAAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAATAGCAAAAGCTTGGAGAATATCGACACTGAGGGTTTGATATACTTTGAAGACTTAATGGAGGAGTCATCTCTTTCATCCAGCTTAGAAATTCTAGAAAAGGACTACGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACGATGAGTGGCATCAAGAGGAAGTTTGACTCAATGTGCTCTCCTGCAAGAACAATAACAAGTCCAATGTCTCCACTTCGCTCTCCTACTTCACATGCCAATGGCACTCTTAATAGCGGCAATGCAAAACTTGCTGCTACACCTGTTAGCACAGCCATGACGACAGCAAAGTGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAAACCTTCAGTAGAGATGGAGCGCTTCTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTTGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTGCCGAACTGGTTTTGGCAACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGCTCTTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCTTGATTGTTGCTAAACCTGCTCTTGCTGCTGAAATAAATCGTTTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTATCGGGGTATCAACCATGCCTACTTTGCAAAAGCATGAGAGTTTGCCAGGTCAGAACGGGGATATAAGGTCACCAAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCTTTCAGTAATATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGTCCCAATCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATATTTTTCAGCAAGATCATCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGCTGCAATTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGATTGGTCTTCGACACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAATTGACAGGGTTCCTCAAGTCAACAACAATAGTGATGCACCATGTCCTGGATCACCCAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGCTTGAATGGTACACGGAAACTCCGAGGCACACTAAATTTTGACGATGCGGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCTAACAGCCTTTACCTTCAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAG | 3069 | 41.71 | MENAEGMKPSATNNCHTDGGTDTVEVQFSELCQNGLHLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKNSESSHQGAENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSSLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLLGSLCNVYDTSEEELREVMEKANSLIEDILKKKPRLASECNSKSLENIDTEGLIYFEDLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMCSPARTITSPMSPLRSPTSHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPTLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSTRRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKIDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS | 1022 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6173365 | 6179847 | - | Lag0040573.1 | Lac13g0777 | 591933 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0777 | 1022 | PANTHER | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 14 | 1019 | IPR028309 | GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER) | |
Lac13g0777 | 1022 | SUPERFAMILY | Cyclin-like | 741 | 910 | IPR036915 | - | |
Lac13g0777 | 1022 | FunFam | Retinoblastoma-related protein 1 | 693 | 903 | - | - | |
Lac13g0777 | 1022 | Gene3D | - | 421 | 609 | - | - | |
Lac13g0777 | 1022 | Pfam | Domain of unknown function (DUF3452) | 98 | 236 | IPR024599 | - | |
Lac13g0777 | 1022 | FunFam | Retinoblastoma-related protein 1 | 197 | 355 | - | - | |
Lac13g0777 | 1022 | MobiDBLite | consensus disorder prediction | 390 | 410 | - | - | |
Lac13g0777 | 1022 | SMART | RB_A_2 | 418 | 619 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Lac13g0777 | 1022 | SUPERFAMILY | Cyclin-like | 426 | 621 | IPR036915 | - | |
Lac13g0777 | 1022 | CDD | CYCLIN_AtRBR_like | 743 | 874 | - | - | |
Lac13g0777 | 1022 | Pfam | Retinoblastoma-associated protein B domain | 743 | 870 | IPR002719 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Lac13g0777 | 1022 | Gene3D | - | 197 | 355 | - | - | |
Lac13g0777 | 1022 | FunFam | Retinoblastoma-related protein 1 | 421 | 609 | - | - | |
Lac13g0777 | 1022 | Coils | Coil | 270 | 294 | - | - | |
Lac13g0777 | 1022 | Coils | Coil | 331 | 351 | - | - | |
Lac13g0777 | 1022 | Gene3D | - | 706 | 898 | - | - | |
Lac13g0777 | 1022 | SMART | DUF3452_2 | 87 | 236 | IPR024599 | - | |
Lac13g0777 | 1022 | Pfam | Retinoblastoma-associated protein A domain | 418 | 619 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23180 | PF01858 | RB_A | 1.20E-63 | CL0065 | Lac | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0777 | K04681 | - | csv:101219810 | 1914.04 |