Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0807 | ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCCCGAATTAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGAGCAAAGACAATGAATTCATTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGACATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATATGGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGCAGCACTGGTAGAGGAAGAGGGCGAGGACGAGGAAGGGGTCGAGGACGGCCTGCTCGAACAGCCGAAAGGGACCACTTCCAACCCAACCCCGACGTCGACCCTTGCACATCTATAGAAAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCATGTCGAGCCTAGCGAAACATCAAAAGAAGTAGGTGAAGCCAATCAAGCCATCCAAAACTTCGATCTTAATGCTGACGTCAATACCAGCGAAGAATCCAAGACTGTAGCAGCAGCAGTACCAGACGTGGCCGTCGAACCAGCCGCACCAACTACTACCGAGTCCGAGGCTAAAGCTGCTGATGAATTCCCTGCCTGGCCTCTTTCTGACGTGGACAAAATGGCGATTGACCCTCTCCAATATGCTCATCTCAGCACAAGAGTAGATGAAGAAGAGGAAGATTACGATGAAGAGGAGTAA | 846 | 47.75 | MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDMDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDHFQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSETSKEVGEANQAIQNFDLNADVNTSEESKTVAAAVPDVAVEPAAPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6477195 | 6481045 | - | Lag0040603.1 | Lac13g0807 | 591963 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0807 | 281 | MobiDBLite | consensus disorder prediction | 144 | 158 | - | - | |
| Lac13g0807 | 281 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 8 | 71 | IPR003958 | - | |
| Lac13g0807 | 281 | MobiDBLite | consensus disorder prediction | 221 | 245 | - | - | |
| Lac13g0807 | 281 | MobiDBLite | consensus disorder prediction | 90 | 188 | - | - | |
| Lac13g0807 | 281 | MobiDBLite | consensus disorder prediction | 174 | 188 | - | - | |
| Lac13g0807 | 281 | Gene3D | Histone, subunit A | 1 | 86 | IPR009072 | GO:0046982(InterPro) | |
| Lac13g0807 | 281 | SUPERFAMILY | Histone-fold | 4 | 89 | IPR009072 | GO:0046982(InterPro) | |
| Lac13g0807 | 281 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 4 | 173 | IPR050568 | GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER) | |
| Lac13g0807 | 281 | FunFam | dr1-associated corepressor homolog | 1 | 86 | - | - | |
| Lac13g0807 | 281 | MobiDBLite | consensus disorder prediction | 90 | 132 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0807 | Lac-Chr13:6477195 | Lac9g2749 | Lac-Chr9:45668200 | 5.70E-54 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23181 | PF00808 | CBFD_NFYB_HMF | 2.10E-19 | CL0012 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0807 | K21752 | - | csv:101209714 | 461.455 |