Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0807 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCCCGAATTAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGAGCAAAGACAATGAATTCATTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGACATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATATGGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGCAGCACTGGTAGAGGAAGAGGGCGAGGACGAGGAAGGGGTCGAGGACGGCCTGCTCGAACAGCCGAAAGGGACCACTTCCAACCCAACCCCGACGTCGACCCTTGCACATCTATAGAAAACAGGAACAAGAACCCCAACCCAGATGTGCACATGGAGCATCATGTCGAGCCTAGCGAAACATCAAAAGAAGTAGGTGAAGCCAATCAAGCCATCCAAAACTTCGATCTTAATGCTGACGTCAATACCAGCGAAGAATCCAAGACTGTAGCAGCAGCAGTACCAGACGTGGCCGTCGAACCAGCCGCACCAACTACTACCGAGTCCGAGGCTAAAGCTGCTGATGAATTCCCTGCCTGGCCTCTTTCTGACGTGGACAAAATGGCGATTGACCCTCTCCAATATGCTCATCTCAGCACAAGAGTAGATGAAGAAGAGGAAGATTACGATGAAGAGGAGTAA 846 47.75 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDMDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDHFQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSETSKEVGEANQAIQNFDLNADVNTSEESKTVAAAVPDVAVEPAAPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6477195 6481045 - Lag0040603.1 Lac13g0807 591963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0807 281 MobiDBLite consensus disorder prediction 144 158 - -
Lac13g0807 281 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lac13g0807 281 MobiDBLite consensus disorder prediction 221 245 - -
Lac13g0807 281 MobiDBLite consensus disorder prediction 90 188 - -
Lac13g0807 281 MobiDBLite consensus disorder prediction 174 188 - -
Lac13g0807 281 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Lac13g0807 281 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
Lac13g0807 281 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 173 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Lac13g0807 281 FunFam dr1-associated corepressor homolog 1 86 - -
Lac13g0807 281 MobiDBLite consensus disorder prediction 90 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0807 K21752 - - csv:101209714 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0807 Lac-Chr13:6477195 Lac9g2749 Lac-Chr9:45668200 5.70E-54 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0076 . 116 300 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.3e-88 323.6
Lac3g2661 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.2e-52 204.1
Lac12g0292 . 79 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.5e-52 203.8
Lac3g2661 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 2.1e-54 209.9
Lac12g0292 . 19 177 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.0e-49 191.8
Lac3g0076 . 116 214 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 3.2e-42 169.5
Lac3g2661 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.6 6.4e-61 231.5
Lac12g0292 . 25 221 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.2e-52 202.6
Lac3g0076 . 116 274 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 7.8e-51 198.0
Lac3g0076 . 116 273 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 2.1e-37 153.3
Lac3g0076 . 116 300 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.1e-80 297.4
Lac3g2661 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.7e-49 193.7
Lac12g0292 . 79 230 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.9e-49 193.0
Lac12g0292 . 43 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.9e-64 243.0
Lac3g2661 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 7.2e-51 198.0
Lac3g0076 . 116 239 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 6.1e-50 194.9
Lac13g0807 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.0 9.5e-60 228.0
Lac9g2749 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.5 3.0e-53 206.5
Lac6g0758 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.8 1.1e-36 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23181 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Lac TF