Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0849 | ATGGTTGATGGTCCCCGCCATTTAGTTCGTCAGATGAGTGGTTCGCGTGGGACCTTATTAAAGAGTATGTCTCGGAAATCTCAGGTGATGATTTCACTGCAATCTACTAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCGCAAGCTGCTGAAGCTTTGGAAGAGCCTTATGATCGGAATGTGAAAAACCTGGAAGCTAGTTCGTTAGTTAATGGTGAAAATGGTGCTTCTGGAGATGAGGCCGTCAATCGACTTCAATACAGTATGAACAATATTGACGAGCTGAATGAGGACTCGCCATATAATTGCAATATTACAACAGTGGAAGAAAGACCGACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTGTCGCCTTCGCATAGTGAAAGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTTCAAATGGGAATTGGGATCTTGTAAAGATACTGTCAACTGCAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTCCTGCAAATCCAGATATCCTTGATGGCGTTGATGATCTTATGCAACTCAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATCTGTATGGAAATGATTACATTGAAGGATACAAGCGCAAAACAGTTGATAGCCCGCATGTTTATGCTATTACAGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCTGCCCTTGGCGGTGGAAGTGGAATAGAATATGAGATATTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGTCGCTTTGGAAAATTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTTCAATGCACGGAGGGAGAAAGGTCATACCACATCTTTTATCAACTCTGTAGTGGGGCTCCTCCTGCACTTAAAGAGAGATTAAACTTGAGAAGAGCGGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTTCAATAAGTAGAGTAAATGATGCTGACAATTTTCATGTAGTCATGGAAGCACTAGATGTTGTCCATATTAGCAAAGAAGATCAGCACAGTGTATTTGCAATGCTTGCTGCCGTGCTGTGGCTGGGAAATGTTTCATTTAGTGAGATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTTGCTAAGCTGATTGAGTGTGAGATCGAGGAGCTTAAACTAGCTTTATCAACCCGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACTTTATCTCAGGCTATTGATACTAGAGATGCTTTGGCAAAGTCAATATACGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAAATCTCTTGCTGTAGGCAAACGACGCACTGGCAGATCTATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGAAATAGTTTTGAACAGTTCTGTATTAACTATGCAAATGAGAGACTACAGCAGCATTTCAATCGTCACTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATTGACTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTATTGTCCCTGCTAGATGAGGAGTCTACTTTCCCAAATGGTACAGATCTGACATTTGCGAACAAGCTTAAGCAGCATTTGCGTCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTCACTGTCTGTCATTATGCAGGAGAGGTCACTTATGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCATGCTCATGCCATCTCCCTCGGATTTTTGCATCCAATATGCTAAATCAATCAGAGAAGTCCATAGGTGGCACTTTACATAAATCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCTTCGTCTTGAAAATACAACACCTCATTTCATCCGTTGCATCAAGCCCAACAACCTTCAGTCTCCCAGATTGTATGAGCAAGGACTTGTATTACAGCAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCAGGATGTCACATCAGAAATTTGCTAGGAGGTATGGTTTCCTTCTACAAGAAAGCATTGCATCGCAGGATCCACTAAGTGTCTCAGTTGCAATTCTTCATCAATTTGATATAGTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTCCATGGGATTCTTTGTGTTCAAAGCTGTTACAGAGGGCACCTTGCTCGACGCCACCTCAAAGAGCTGAGGAGAGGGATTTCCGTACTTCAGTCATTTGCACGTGGGGAGCAAACCAGAAAAGAATATGCAATCTTGATACGAAGGCATAGGGCCGCTATTTCTATTCAGAAGTGTGTGAAAGCCAGAATTGCTAGAAAACGTTTGGAGAAAGTCTGTGATGCATCACTTGTGATACAATCAGTTATCCGTGGCTGGTTGGTCAGGAGATGCTCGGGAGATATAGGATTAATGACATCTGGTGGTCTGACGGCAAATGGGTCGGGTGAGGTGCTAGTTAAGTCATCATTCGTTGCAGAATTACAACGTCGTGTCCTGAGGGCAGAGGCTGCTTTGAGAGATAAAGAAGAGGAAAACGACATCCTCCATCAGCGTCTTCAACAGTACGAGAACCGTTGGTCAGAGTATGAACTAAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCGAAGAAAAGCTTAGCCGTTGATGATTCAGAGAGAAATTCTGATGCATCAGTCAATGCAAGTGATGACAGAGGATACAGTTGGGAAGTGGGTAGTAACAACACAGCTAATGAAAGCAATGGAGTCAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGGTTGGCTGAAGAATTCGAACAAAGAAGTCAAGTCTTCGGCGACGATGCGAAGTTCTTGGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTCGACCCAGACAGGGAACTCAGAAGGTTGAAACAGATGTTCGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGCGAAACGAAAGTGATTTTGAATAAGCTTGGGAATGAAGGTGCCATGGATAAGGTTAAGAAGAAGTGGTGGGGAAGGAGGAACAGCACAAGAGAAACTCTGTGCCTCTCGTTACTGACTCTCCACTTGCCGCCGCCACTCGGTCCAAAGCTGCTGGCGATGTTGGCCGCCGGCGTTCGCGTTTCTTACCACCTTCGAGAGTGCGACTGTCACTTCGGCTTCGGATTAACCTCAGGCCTTACCTCCTCCGCCGTCCTTCTCTTTCCGCCGATACGCCCTCGCAAGCCCACTTCTTCTTTCCCTTCAATTTGTCACCGCTCCCAACGACGTGGGGTTTCTTTCTTTTGCTCCATTATCCCCTCCACCTCCCCCGGCGAAATCCCCGTTCTCTCCGATTGTTTTGGTTCACGAGAAGATGATCGTGAAGTCTCTGTGGCAGGAGGAATAGTAGCATTAGGAAAATTTGATGCTCTCCACGTTGGTCATCGAGAGCTTGCAATTCAAGCATCAAAGGTTGGATCTCCATTTCTATTGTCATTTGTTGGAATTGCTGAAATACTCGGTTGGGAACCTAGGGCTCCCGTAGTGGCTCAATGTGATAGGAAGCGAGTTCTTTCCTCTTGGGCCCCATACTGCCGAAACTCAGTTCCATCAGAATATCAGATTCAATTTTCAATCGTTCGTCATCTATCTCCACGAGAATTTGTTGAGAAATTATCAAAGGAGCTTGGTGTTTGTGGAGTTGTGGCAGGTGAAAGTTATAGGTTTGGATATAAAGCAGCAGGTGACGCAGGGGAGCTGGTGAAACTGTGTGAGGAATATGGGTTAGCTGCTTATATTATAAAATCTGTGATGGATAGAAACCAAAAAGTTGTTAATTCTGCCAATTCAAAGGAGAGAGGACAAGTGTCATCTACTCGGGTTCGCTATGCCCTTTCCGTTGGAGATATGAAATATGTCTCTGAGCTTTTAGGCCGGAGACATCGTCTTATTTTGATGGCAAAAAGCCTAGAAGGATTAAGCAATAGCAATAGCAGTAGCAGATTGTCAGCCCCAAAATCATGTTTATTAAATTTAGCACCAAAAGAAGGTCTCTATAATAAGTGTTTTGTCTGTACAATTGACGAGAACCTAATTCCATGTCGAGTAGTTATCGACTCGACCCACGTGCACGTAGAAATGGATGAGATAGGTACATGTCATCCTGTAGGAACCCAAAACTACTTAAGTATAGAATTTGGCGATGAAGGAGTATGA | 4749 | 42.68 | MVDGPRHLVRQMSGSRGTLLKSMSRKSQVMISLQSTKSMPVNSRFMIPQAAEALEEPYDRNVKNLEASSLVNGENGASGDEAVNRLQYSMNNIDELNEDSPYNCNITTVEERPTMDDGEDGFMPLPSPSVSPSHSESRWGDTSSYTPRKILQSWFKLSNGNWDLVKILSTAGTESVVSLTDGKVLKVKAENLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIEGYKRKTVDSPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGAPPALKERLNLRRAEEYKYLSQSNCFSISRVNDADNFHVVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSEIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLSQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLRPNSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPRIFASNMLNQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNLQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESIASQDPLSVSVAILHQFDIVPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCYRGHLARRHLKELRRGISVLQSFARGEQTRKEYAILIRRHRAAISIQKCVKARIARKRLEKVCDASLVIQSVIRGWLVRRCSGDIGLMTSGGLTANGSGEVLVKSSFVAELQRRVLRAEAALRDKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDKVKKKWWGRRNSTRETLCLSLLTLHLPPPLGPKLLAMLAAGVRVSYHLRECDCHFGFGLTSGLTSSAVLLFPPIRPRKPTSSFPSICHRSQRRGVSFFCSIIPSTSPGEIPVLSDCFGSREDDREVSVAGGIVALGKFDALHVGHRELAIQASKVGSPFLLSFVGIAEILGWEPRAPVVAQCDRKRVLSSWAPYCRNSVPSEYQIQFSIVRHLSPREFVEKLSKELGVCGVVAGESYRFGYKAAGDAGELVKLCEEYGLAAYIIKSVMDRNQKVVNSANSKERGQVSSTRVRYALSVGDMKYVSELLGRRHRLILMAKSLEGLSNSNSSSRLSAPKSCLLNLAPKEGLYNKCFVCTIDENLIPCRVVIDSTHVHVEMDEIGTCHPVGTQNYLSIEFGDEGV | 1582 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6846640 | 6869465 | - | Lag0040645.1 | Lac13g0849 | 592005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0849 | 1582 | CDD | MYSc_Myo8 | 215 | 861 | IPR036022 | - | |
| Lac13g0849 | 1582 | ProSiteProfiles | IQ motif profile. | 924 | 951 | - | - | |
| Lac13g0849 | 1582 | Gene3D | - | 807 | 874 | - | - | |
| Lac13g0849 | 1582 | PRINTS | Myosin heavy chain signature | 231 | 250 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | PRINTS | Myosin heavy chain signature | 559 | 587 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | PRINTS | Myosin heavy chain signature | 285 | 310 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | PRINTS | Myosin heavy chain signature | 327 | 354 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | PRINTS | Myosin heavy chain signature | 612 | 640 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | SUPERFAMILY | Nucleotidylyl transferase | 1314 | 1490 | - | - | |
| Lac13g0849 | 1582 | Gene3D | HUPs | 1301 | 1491 | IPR014729 | - | |
| Lac13g0849 | 1582 | FunFam | Unconventional myosin-XIX | 571 | 763 | - | - | |
| Lac13g0849 | 1582 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 148 | 197 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 440 | 548 | - | - | |
| Lac13g0849 | 1582 | Gene3D | - | 383 | 439 | - | - | |
| Lac13g0849 | 1582 | Pfam | FAD synthetase | 1391 | 1457 | IPR015864 | GO:0003919(InterPro)|GO:0009231(InterPro) | |
| Lac13g0849 | 1582 | Gene3D | - | 926 | 967 | - | - | |
| Lac13g0849 | 1582 | Gene3D | - | 878 | 925 | - | - | |
| Lac13g0849 | 1582 | ProSiteProfiles | IQ motif profile. | 898 | 927 | - | - | |
| Lac13g0849 | 1582 | Coils | Coil | 993 | 1041 | - | - | |
| Lac13g0849 | 1582 | MobiDBLite | consensus disorder prediction | 1066 | 1097 | - | - | |
| Lac13g0849 | 1582 | Gene3D | Kinesin motor domain | 200 | 806 | IPR036961 | - | |
| Lac13g0849 | 1582 | MobiDBLite | consensus disorder prediction | 1081 | 1097 | - | - | |
| Lac13g0849 | 1582 | SMART | iq_5 | 874 | 896 | IPR000048 | GO:0005515(InterPro) | |
| Lac13g0849 | 1582 | SMART | iq_5 | 897 | 919 | IPR000048 | GO:0005515(InterPro) | |
| Lac13g0849 | 1582 | SMART | iq_5 | 946 | 968 | IPR000048 | GO:0005515(InterPro) | |
| Lac13g0849 | 1582 | SMART | iq_5 | 923 | 945 | IPR000048 | GO:0005515(InterPro) | |
| Lac13g0849 | 1582 | ProSiteProfiles | IQ motif profile. | 877 | 903 | - | - | |
| Lac13g0849 | 1582 | Gene3D | - | 571 | 763 | - | - | |
| Lac13g0849 | 1582 | FunFam | Myosin heavy chain | 383 | 439 | - | - | |
| Lac13g0849 | 1582 | PANTHER | MYOSIN | 154 | 1194 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lac13g0849 | 1582 | SMART | MYSc_2a | 195 | 874 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 174 | 921 | IPR027417 | - | |
| Lac13g0849 | 1582 | Pfam | IQ calmodulin-binding motif | 950 | 965 | IPR000048 | GO:0005515(InterPro) | |
| Lac13g0849 | 1582 | Pfam | IQ calmodulin-binding motif | 879 | 896 | IPR000048 | GO:0005515(InterPro) | |
| Lac13g0849 | 1582 | Pfam | Myosin head (motor domain) | 203 | 861 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac13g0849 | 1582 | ProSiteProfiles | Myosin motor domain profile. | 201 | 873 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0849 | Lac-Chr13:6846640 | Lac2g1312 | Lac-Chr2:10928078 | 2.40E-303 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0849 | - | - | - | 0.0 |