Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0853 ATGTTGCTCTCGGAGCCCCCAAAGAGCAGCAACAACACCAAATTAATGCACATCAAAGAATTCTTTGGCTTCTCTCACTCCTCTCCCTCCAAATCTCTCCACTCCTCTTCTTCCTTCCCCTCCTCCGCCCGCCGGAGACCACCGCCGGCCACCAGCTATGACTCTTCCGAATCGGCGGCCATGGAAGAGGCCATCACAAACTCAGAACCCATCATCACCAAATGGGACCCGGACTCCTCTGAGTTCAACAGAATCACCTTCCTCTTCCGCCACGGCCGAGCCGAAGCCGACGAGTTTCTGAACTCCGTCAACGACCTCCGACGAGCGATGGACTTTTTCATATCGGAAAATTCCACCTCCACCGTCCTCGTTCCCGCTCAAAAGCTGATGCAGGCCGCCATGAGACGACTCGAGAAGGAATTTTACCAGATTTTGAGTGAGAATCGCCAGAATCTCGACCCGGAATCCATCTCCGGCAGGTCCTCCGATCGGTCGACGGCCGACGGGGAAACCGGTGGGGATTCCGTCTCGGCGGAGTTGAAATCGATCGCTGACTGTATGATCGATTCTGGGTATGGGAAAGAGTGCGTAAAAATCTATAAAGTAATCCGAAAATCGATCGTCGATGAAACTCTGTATCGGCTCGGAACAGAGAAGTTCAAACTTTCGAGAATTCAGAGATGGAATTGGGATTCGGTCGAGCACGTGATCAAGAACTGGATGAATTCGATTAAGCTCGCCGTGAACACTCTGTTTCGTGGCGAGAAAATTCTCTGCGATCATGTTTTTTCGAGATCGGAGAAAATCAGAGAGTCCTGTTTTTCAGAGATCACAAAAGATGGTGCGATCACTTTGTTCAAGTTCCCGGAATTGGTCGCAAAAGGGAAGAAAGATTCCGATAAAATCTTTCTGTTATTGGAGCTTTACGACGCGAATTCCGACGTCTTGCCGGAAATTGAAGTCATATTCGACTCTGTTTCTACATCCGCCATTAAAGCGCAAGCTCAAACGTCGATGACGAAGCTCGCAGATTCAATCCGCGATATTCTGTGCGAATTCGAGTCGACAATCCAGAAAGACTCGTCCAAAACTCCAGCACCCGGCGGCGGAATCCACCCACTGACCCGATCGGCGATGAGCTACATCTCGTCGCTGGGAGACTACGCCGTAACCCTCTCCGACATCCTCTCCGCCGAAAACTCTCAGATTCCGGCGTCGTACGTCGAGACCCACGCCGCCGCCGACGCACTCTCGTCGCCGGTGGCAGCGCAGGTCGGGTGGCTGATTCTCGTCCTCCTCTGCAAACTGGACACGAAAGCAGAGCTCTACAGAGACGTCTCGCTATCGTATCTCTTCCTGGCGAACAACCTGAACTTCATCGTGAAGACGGTGACGGCGACGAATCTGAAGATGCTGGTCGGCGGCGAGTGGGTGGCGAATCACGCGAGCAAGATGAAGGTGTACGCGGCGAACTACGAGGCGACAGCGTGGAACAGAGTGATGGCGTCGGTGCCGGAGAGGGGGTCGCCGGAAGTGGGGTCGCCGGAGACGGCGAAGGAGGGGTTGAAGAAGTTCAATGCGGCGTTTGAAGAGGCTTACCGGAAGCAGACGTCGTGGAGAGTGGAGGACGGGAAGCTGAGAGATGAGCTGAAGATGTCGATCGCGAAGAAGGTGCTGCCGATGTACAGAGAGTTCTACGAGGGGTGTGTTGAGAAGGTGGGTGTAGAGAGAGGGGTTTTGAGGTTTTCACCTGATGATTTGGGCAATTATTTGTCGGATTTGTTTCATGGGGTTTCTTCTTCTGGGAGTAGTTCTTCTTTGTCTTCCTCTGGGAGTGTGTAA 1842 52.99 MLLSEPPKSSNNTKLMHIKEFFGFSHSSPSKSLHSSSSFPSSARRRPPPATSYDSSESAAMEEAITNSEPIITKWDPDSSEFNRITFLFRHGRAEADEFLNSVNDLRRAMDFFISENSTSTVLVPAQKLMQAAMRRLEKEFYQILSENRQNLDPESISGRSSDRSTADGETGGDSVSAELKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYRLGTEKFKLSRIQRWNWDSVEHVIKNWMNSIKLAVNTLFRGEKILCDHVFSRSEKIRESCFSEITKDGAITLFKFPELVAKGKKDSDKIFLLLELYDANSDVLPEIEVIFDSVSTSAIKAQAQTSMTKLADSIRDILCEFESTIQKDSSKTPAPGGGIHPLTRSAMSYISSLGDYAVTLSDILSAENSQIPASYVETHAAADALSSPVAAQVGWLILVLLCKLDTKAELYRDVSLSYLFLANNLNFIVKTVTATNLKMLVGGEWVANHASKMKVYAANYEATAWNRVMASVPERGSPEVGSPETAKEGLKKFNAAFEEAYRKQTSWRVEDGKLRDELKMSIAKKVLPMYREFYEGCVEKVGVERGVLRFSPDDLGNYLSDLFHGVSSSGSSSSLSSSGSV 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6913197 6915038 - Lag0040649.1 Lac13g0853 592009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0853 613 Gene3D Exocyst complex component Exo70 71 604 - -
Lac13g0853 613 PANTHER EXOCYST COMPLEX PROTEIN EXO70 52 597 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac13g0853 613 MobiDBLite consensus disorder prediction 152 172 - -
Lac13g0853 613 Pfam Exo70 exocyst complex subunit C-terminal 238 593 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac13g0853 613 MobiDBLite consensus disorder prediction 25 59 - -
Lac13g0853 613 Pfam Exocyst complex component Exo70 N-terminal 69 147 - -
Lac13g0853 613 SUPERFAMILY Cullin repeat-like 65 596 IPR016159 -
Lac13g0853 613 MobiDBLite consensus disorder prediction 152 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0853 Lac-Chr13:6913197 Lac9g2512 Lac-Chr9:43821538 1.20E-141 dispersed
Lac1g2070 Lac-Chr1:42231880 Lac13g0853 Lac-Chr13:6913197 2.00E-101 wgd
Lac10g3074 Lac-Chr10:45202775 Lac13g0853 Lac-Chr13:6913197 6.10E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0853 K07195 - csv:101221801 989.949