Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0870 ATGCGGAATCTCTCAAAACGAACGTCCGTTGGAGCAGAGTATCAAAAAGTAAAGCATCCGAGAATGGAAGAAAATATGCGAAATCGAACTTGTGAATATTCGAATGCCAAATGCTGGAGTCAGATCAGTGCCTTTCTGAAAGAATCGAGGGCTCATTTCATCAGCGAAGAGACGGCGAACGATTCAAGTTGGTCAGTTTTACTTTTCAATTCGAAGGGTTTATCATTTCTTACTTTGTCTGCTCTGCCTTTCAATTTATCGCTCCTAATTTTCCCGGAAAATTTACTCCCTCAGTTTCTCGAGAAAGCGATCTGGAGGAACTTTGTTTCTTTACTTGTTTTGAATTGTTACTTCGACTCATATCTTTTAGGGTTTTTGCTGTTTTTCCCTCTTTTGCCGATTAGGAAAGAAGAAAAGGGCCTGCAAAATCTCTCGGCAATCTGTGCTCAAGTTTCTACGTATAGCCATCAAGAAACTCAATGTGTTCTCATTGAAAGATTAATGGTGTCTGCTTTGATCACTGGGATGGTATCTGAAACTTTGATGAAGATTGTATCACCCTGCTGGAAACCTTCTGTTGAAGGCGAAAATTCTAGTAGGGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGGCGCCATATCAATGGAGAATTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGCAGCCAACTTGAGTCAGGGCCACTGAGCTTATATGAATCGGGTCCCGTTGGAACGTTTGTTGGAATCTATGATGGCCATGGAGGTCCTGAAGCTGCAGAATTCATAAATGATCGTCTGTTCAATAATATGAAGAAATTTATTCCAGAAAATCAGGGAGTATCAGCTGAAATCATTAACAAAGCATTCTTGGAGACAGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGTTTATTAAGCCGCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATTATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCTATCCAATTGTCATCTGAGCACAATGCAAGTATTGAATCTGTGAGAGAGGAGTTGCACTCGTTGCATCCCAATGATCCACAGATCGTGGTGTTAAAGCACAAGGTGTGGCGTGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCGAGAGCCTCTTTTACCGAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTAAAAGCCGAGCCTGCTATCGTAGTGCAGAAATTGTACCCAGAGGATCAATTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGTAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAATGGGATTGCAAGGAAACTTGTTAAAGCTGCTCTTCATGAAGCTGCAAAAAAAAGAGAAATGAGGTACACAGACTTGAAGAAGATCGACCGCGGGGTAAGAAGACATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTTGATTCGCATCTGATTAGTCGCAGTCCGAGCCACGGACCGATGCTTTCAATCAGAGGAGGTGCTGGTATCCTCGCTAGATCATAG 1680 41.9 MRNLSKRTSVGAEYQKVKHPRMEENMRNRTCEYSNAKCWSQISAFLKESRAHFISEETANDSSWSVLLFNSKGLSFLTLSALPFNLSLLIFPENLLPQFLEKAIWRNFVSLLVLNCYFDSYLLGFLLFFPLLPIRKEEKGLQNLSAICAQVSTYSHQETQCVLIERLMVSALITGMVSETLMKIVSPCWKPSVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSLYESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKKFIPENQGVSAEIINKAFLETEEEFLSLVKKQWFIKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGIARKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSHGPMLSIRGGAGILARS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7066149 7070253 + Lag0040666.1 Lac13g0870 592026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0870 559 Pfam Protein phosphatase 2C 257 501 IPR001932 -
Lac13g0870 559 ProSitePatterns PPM-type phosphatase domain signature. 258 266 IPR000222 GO:0043169(InterPro)
Lac13g0870 559 PANTHER PROTEIN PHOSPHATASE 217 531 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac13g0870 559 SUPERFAMILY PP2C-like 233 533 IPR036457 -
Lac13g0870 559 FunFam Phosphatase 2C family protein 213 542 - -
Lac13g0870 559 ProSiteProfiles PPM-type phosphatase domain profile. 224 532 IPR001932 -
Lac13g0870 559 SMART PP2C_4 216 530 IPR001932 -
Lac13g0870 559 CDD PP2Cc 225 532 IPR001932 -
Lac13g0870 559 Gene3D - 214 541 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0870 Lac-Chr13:7066149 Lac9g1843 Lac-Chr9:38204733 1.90E-146 dispersed
Lac10g3064 Lac-Chr10:45114951 Lac13g0870 Lac-Chr13:7066149 1.20E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0870 K01102 - csv:101220760 735.717