Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0871 ATGGCGACTCCGACGCTTGCCGGCACCATCGGCTTCTCACAGCCCTCTTCTTGCTCAGATATTTCAGTTTCCTGCATTCCCTTTTCAACCAGGAGATTAAGATTCTCGAGCACCATTCTTTCTCCTCTCAACCTTCAACAACAAGCATCTGGAAGAAGAGCCAGACCTCTAATTGCTGTGAAAATGGCTGCTGAAGCTTTTCAGGAAGTTCTTCCTCCAGCTCTCACTTTGGTTTCAGAACCACCTCCTGTCTTCGATGGAACAACGAGGCTTTATATTTCTTATACGTGCCCTTATGCGCAGCGTGCGTGGATTACTCGGAACTGTAAGGGTTTGCAGAATAAGATACAATTGGTGCCAATAAATCTACAAGATAGGCCATCTTGGTACAAGGAGAAAGTTTACCCACCTAACAAGGTACCAGCTCTTGAACATAATAATGAAGTCAAAGGAGAGAGTCTTGACTTAATTAAATATATCGACAGCAATTTTGAGGGGCCTTCATTATTTCCTGATGATCCGGGAAAGAGAGAGTTTGCTGAAGAGTTGATAAGCTACGTTGACTCTTTCAGGGGATCTGTGGTTTCTTCATTTAAAGGAGATGGAAATGAAGCTGATGCGGCGTTTGACTACATCGAATCAGCTCTTTCAAAATATGACGATGGCCCCTTTTTTCTAGGCCAGTTTAGTTTGGTGGATATAGCTTATGCGCCGTTTATTGAAAGGTTTCAGCCGTTCTTATTGGAAGTAAAGACATATGACATTACTGCTGGCAGGCCAAAACTGGCAGCTTGGTATGAGGAGATGAACAAGATCGAGGGGTATCGACAAACAAAGAGCGATCCACAGGAGCTTGTTGATAGCTATAAGAAGCGATTCTTGACCCCTTCGTGA 894 43.96 MATPTLAGTIGFSQPSSCSDISVSCIPFSTRRLRFSSTILSPLNLQQQASGRRARPLIAVKMAAEAFQEVLPPALTLVSEPPPVFDGTTRLYISYTCPYAQRAWITRNCKGLQNKIQLVPINLQDRPSWYKEKVYPPNKVPALEHNNEVKGESLDLIKYIDSNFEGPSLFPDDPGKREFAEELISYVDSFRGSVVSSFKGDGNEADAAFDYIESALSKYDDGPFFLGQFSLVDIAYAPFIERFQPFLLEVKTYDITAGRPKLAAWYEEMNKIEGYRQTKSDPQELVDSYKKRFLTPS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7072635 7077029 + Lag0040667.1 Lac13g0871 592027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0871 297 Gene3D Glutaredoxin 62 165 - -
Lac13g0871 297 FunFam Glutathione S-transferase L2, chloroplastic 62 165 - -
Lac13g0871 297 Pfam Glutathione S-transferase, N-terminal domain 91 167 IPR004045 -
Lac13g0871 297 Pfam Glutathione S-transferase, C-terminal domain 204 267 - -
Lac13g0871 297 CDD GST_C_Lambda 173 290 - -
Lac13g0871 297 SUPERFAMILY GST C-terminal domain-like 164 293 IPR036282 -
Lac13g0871 297 SFLD Main (cytGST) 90 271 - -
Lac13g0871 297 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 87 168 IPR004045 -
Lac13g0871 297 SUPERFAMILY Thioredoxin-like 82 169 IPR036249 -
Lac13g0871 297 PANTHER GLUTATHIONE S-TRANSFERASE L1 62 295 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Lac13g0871 297 FunFam Lambda class glutathione S-transferase 166 296 - -
Lac13g0871 297 Gene3D - 166 296 - -
Lac13g0871 297 SFLD Glutathione Transferase (cytosolic) 90 271 IPR040079 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3061 Lac-Chr10:45091571 Lac13g0871 Lac-Chr13:7072635 3.80E-91 dispersed
Lac10g3062 Lac-Chr10:45103231 Lac13g0871 Lac-Chr13:7072635 5.00E-93 dispersed
Lac10g3060 Lac-Chr10:45086947 Lac13g0871 Lac-Chr13:7072635 3.70E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0871 K00799 - csv:101220995 511.916