Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0871 | ATGGCGACTCCGACGCTTGCCGGCACCATCGGCTTCTCACAGCCCTCTTCTTGCTCAGATATTTCAGTTTCCTGCATTCCCTTTTCAACCAGGAGATTAAGATTCTCGAGCACCATTCTTTCTCCTCTCAACCTTCAACAACAAGCATCTGGAAGAAGAGCCAGACCTCTAATTGCTGTGAAAATGGCTGCTGAAGCTTTTCAGGAAGTTCTTCCTCCAGCTCTCACTTTGGTTTCAGAACCACCTCCTGTCTTCGATGGAACAACGAGGCTTTATATTTCTTATACGTGCCCTTATGCGCAGCGTGCGTGGATTACTCGGAACTGTAAGGGTTTGCAGAATAAGATACAATTGGTGCCAATAAATCTACAAGATAGGCCATCTTGGTACAAGGAGAAAGTTTACCCACCTAACAAGGTACCAGCTCTTGAACATAATAATGAAGTCAAAGGAGAGAGTCTTGACTTAATTAAATATATCGACAGCAATTTTGAGGGGCCTTCATTATTTCCTGATGATCCGGGAAAGAGAGAGTTTGCTGAAGAGTTGATAAGCTACGTTGACTCTTTCAGGGGATCTGTGGTTTCTTCATTTAAAGGAGATGGAAATGAAGCTGATGCGGCGTTTGACTACATCGAATCAGCTCTTTCAAAATATGACGATGGCCCCTTTTTTCTAGGCCAGTTTAGTTTGGTGGATATAGCTTATGCGCCGTTTATTGAAAGGTTTCAGCCGTTCTTATTGGAAGTAAAGACATATGACATTACTGCTGGCAGGCCAAAACTGGCAGCTTGGTATGAGGAGATGAACAAGATCGAGGGGTATCGACAAACAAAGAGCGATCCACAGGAGCTTGTTGATAGCTATAAGAAGCGATTCTTGACCCCTTCGTGA | 894 | 43.96 | MATPTLAGTIGFSQPSSCSDISVSCIPFSTRRLRFSSTILSPLNLQQQASGRRARPLIAVKMAAEAFQEVLPPALTLVSEPPPVFDGTTRLYISYTCPYAQRAWITRNCKGLQNKIQLVPINLQDRPSWYKEKVYPPNKVPALEHNNEVKGESLDLIKYIDSNFEGPSLFPDDPGKREFAEELISYVDSFRGSVVSSFKGDGNEADAAFDYIESALSKYDDGPFFLGQFSLVDIAYAPFIERFQPFLLEVKTYDITAGRPKLAAWYEEMNKIEGYRQTKSDPQELVDSYKKRFLTPS | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7072635 | 7077029 | + | Lag0040667.1 | Lac13g0871 | 592027 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0871 | 297 | Gene3D | Glutaredoxin | 62 | 165 | - | - | |
Lac13g0871 | 297 | FunFam | Glutathione S-transferase L2, chloroplastic | 62 | 165 | - | - | |
Lac13g0871 | 297 | Pfam | Glutathione S-transferase, N-terminal domain | 91 | 167 | IPR004045 | - | |
Lac13g0871 | 297 | Pfam | Glutathione S-transferase, C-terminal domain | 204 | 267 | - | - | |
Lac13g0871 | 297 | CDD | GST_C_Lambda | 173 | 290 | - | - | |
Lac13g0871 | 297 | SUPERFAMILY | GST C-terminal domain-like | 164 | 293 | IPR036282 | - | |
Lac13g0871 | 297 | SFLD | Main (cytGST) | 90 | 271 | - | - | |
Lac13g0871 | 297 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 87 | 168 | IPR004045 | - | |
Lac13g0871 | 297 | SUPERFAMILY | Thioredoxin-like | 82 | 169 | IPR036249 | - | |
Lac13g0871 | 297 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 62 | 295 | IPR044629 | GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER) | |
Lac13g0871 | 297 | FunFam | Lambda class glutathione S-transferase | 166 | 296 | - | - | |
Lac13g0871 | 297 | Gene3D | - | 166 | 296 | - | - | |
Lac13g0871 | 297 | SFLD | Glutathione Transferase (cytosolic) | 90 | 271 | IPR040079 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3061 | Lac-Chr10:45091571 | Lac13g0871 | Lac-Chr13:7072635 | 3.80E-91 | dispersed | |
Lac10g3062 | Lac-Chr10:45103231 | Lac13g0871 | Lac-Chr13:7072635 | 5.00E-93 | dispersed | |
Lac10g3060 | Lac-Chr10:45086947 | Lac13g0871 | Lac-Chr13:7072635 | 3.70E-77 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0871 | K00799 | - | csv:101220995 | 511.916 |