Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0882 ATGTTGGATCTTAACGAAACGACGACGAATCGGGTTGCAATGGAAGATTCCGAGACCTCGAATTCCTCCGTCGTGAATGCCGACGAGGTCTGCAACAGCAGAGACGAAGACTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAATTCCGGCGGCGGCGGCGGCGCGTCGACGGAGCTGGTGACTCAGTCGCTTTTTCCGGTGGCCGGAGGGTGGGGGGAAACTGGCTCTCCGGTGCCGAGGACCCATTGGTTGAACCTGTCGTCGACGGCGGATTCCGGCGGCGGAGGAGGACCGGCGGAGCTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACCTTTTACCGGCGGACTGGAAGATGGGAATCTCATATATGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTCGACACAGCTCATGCTGCGGCAAGGGCATATGATCGAGCGGCGATAAAGTTTCGGGGAGTGGATGCGGACATAAACTTCGACATAAGTGATTACGACGAAGATATGAAACAAATGAAGAATCTGAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTCTCTCGTGGAGGATCGAAGTTGAGAGGATTGTCTCTTCAAAAATATGGAAGATGGGAAACTCAAATGAGCCAAATCATCGGAAAAAGTGGAATTGAGCAAAGGTCTTATAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTCAGCATTGGAGGAATTTTCAACTACCATTTAAGTAATTCTTCCCAAAAGCTCAACATTGAAAGACCAAAGAATGAAAATAATGTTTGTGCATATGGTGTGGCTGGACAACAACCTCATATTCCTCCATCTGTGTGGTCTGGTCTTTACTCTGGTTTTTATGCAGATAATGAGGAAAGAGGGAGAGAGAAGAGAAACAACGACTCCACAAAGATCTCTTCGAGCTGGGGATGGCAAATGCCAACGTCAATGTCGATGGCAATGTCAATTCAAGAAAATGCGAGTAAGAATGGAATAAGAGCAAGAGATCAAGAATTGGCTCATGTTTCCAAGAGTGCAGCATCATCAGGATTCTCTTCCTCTTCCAACTTTGGTTCAATTTATAATGGCCAAAACAACACTGCCCTCCACAATACTCTATGCCTTCCAACACCTTCCACCAACATTTCTTGA 1251 47.96 MLDLNETTTNRVAMEDSETSNSSVVNADEVCNSRDEDSSVLIFDILKRENSGGGGGASTELVTQSLFPVAGGWGETGSPVPRTHWLNLSSTADSGGGGGPAELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDISDYDEDMKQMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWETQMSQIIGKSGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHLSNSSQKLNIERPKNENNVCAYGVAGQQPHIPPSVWSGLYSGFYADNEERGREKRNNDSTKISSSWGWQMPTSMSMAMSIQENASKNGIRARDQELAHVSKSAASSGFSSSSNFGSIYNGQNNTALHNTLCLPTPSTNIS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7202381 7205854 + Lag0040678.1 Lac13g0882 592038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0882 416 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0882 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 244 - -
Lac13g0882 416 MobiDBLite consensus disorder prediction 78 101 - -
Lac13g0882 416 MobiDBLite consensus disorder prediction 1 31 - -
Lac13g0882 416 SMART rav1_2 126 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0882 416 MobiDBLite consensus disorder prediction 1 29 - -
Lac13g0882 416 Pfam AP2 domain 126 174 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0882 416 FunFam AP2-like ethylene-responsive transcription factor 125 184 - -
Lac13g0882 416 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677(InterPro)
Lac13g0882 416 ProSiteProfiles AP2/ERF domain profile. 126 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0882 416 CDD AP2 126 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0882 Lac-Chr13:7202381 Lac9g2541 Lac-Chr9:44060890 2.40E-72 dispersed
Lac8g1055 Lac-Chr8:21838413 Lac13g0882 Lac-Chr13:7202381 4.10E-09 transposed
Lac1g2105 Lac-Chr1:42541476 Lac13g0882 Lac-Chr13:7202381 2.50E-59 wgd
Lac10g3053 Lac-Chr10:45026310 Lac13g0882 Lac-Chr13:7202381 4.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23187 PF00847 AP2 5.70E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0882 K09284 - csv:101204131 622.468