Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0882 | ATGTTGGATCTTAACGAAACGACGACGAATCGGGTTGCAATGGAAGATTCCGAGACCTCGAATTCCTCCGTCGTGAATGCCGACGAGGTCTGCAACAGCAGAGACGAAGACTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAATTCCGGCGGCGGCGGCGGCGCGTCGACGGAGCTGGTGACTCAGTCGCTTTTTCCGGTGGCCGGAGGGTGGGGGGAAACTGGCTCTCCGGTGCCGAGGACCCATTGGTTGAACCTGTCGTCGACGGCGGATTCCGGCGGCGGAGGAGGACCGGCGGAGCTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACCTTTTACCGGCGGACTGGAAGATGGGAATCTCATATATGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTCGACACAGCTCATGCTGCGGCAAGGGCATATGATCGAGCGGCGATAAAGTTTCGGGGAGTGGATGCGGACATAAACTTCGACATAAGTGATTACGACGAAGATATGAAACAAATGAAGAATCTGAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTCTCTCGTGGAGGATCGAAGTTGAGAGGATTGTCTCTTCAAAAATATGGAAGATGGGAAACTCAAATGAGCCAAATCATCGGAAAAAGTGGAATTGAGCAAAGGTCTTATAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTCAGCATTGGAGGAATTTTCAACTACCATTTAAGTAATTCTTCCCAAAAGCTCAACATTGAAAGACCAAAGAATGAAAATAATGTTTGTGCATATGGTGTGGCTGGACAACAACCTCATATTCCTCCATCTGTGTGGTCTGGTCTTTACTCTGGTTTTTATGCAGATAATGAGGAAAGAGGGAGAGAGAAGAGAAACAACGACTCCACAAAGATCTCTTCGAGCTGGGGATGGCAAATGCCAACGTCAATGTCGATGGCAATGTCAATTCAAGAAAATGCGAGTAAGAATGGAATAAGAGCAAGAGATCAAGAATTGGCTCATGTTTCCAAGAGTGCAGCATCATCAGGATTCTCTTCCTCTTCCAACTTTGGTTCAATTTATAATGGCCAAAACAACACTGCCCTCCACAATACTCTATGCCTTCCAACACCTTCCACCAACATTTCTTGA | 1251 | 47.96 | MLDLNETTTNRVAMEDSETSNSSVVNADEVCNSRDEDSSVLIFDILKRENSGGGGGASTELVTQSLFPVAGGWGETGSPVPRTHWLNLSSTADSGGGGGPAELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDISDYDEDMKQMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWETQMSQIIGKSGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHLSNSSQKLNIERPKNENNVCAYGVAGQQPHIPPSVWSGLYSGFYADNEERGREKRNNDSTKISSSWGWQMPTSMSMAMSIQENASKNGIRARDQELAHVSKSAASSGFSSSSNFGSIYNGQNNTALHNTLCLPTPSTNIS | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7202381 | 7205854 | + | Lag0040678.1 | Lac13g0882 | 592038 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0882 | 416 | Gene3D | AP2/ERF domain | 125 | 184 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0882 | 416 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 19 | 244 | - | - | |
Lac13g0882 | 416 | MobiDBLite | consensus disorder prediction | 78 | 101 | - | - | |
Lac13g0882 | 416 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Lac13g0882 | 416 | SMART | rav1_2 | 126 | 188 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0882 | 416 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lac13g0882 | 416 | Pfam | AP2 domain | 126 | 174 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0882 | 416 | FunFam | AP2-like ethylene-responsive transcription factor | 125 | 184 | - | - | |
Lac13g0882 | 416 | SUPERFAMILY | DNA-binding domain | 125 | 183 | IPR016177 | GO:0003677(InterPro) | |
Lac13g0882 | 416 | ProSiteProfiles | AP2/ERF domain profile. | 126 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0882 | 416 | CDD | AP2 | 126 | 184 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0882 | Lac-Chr13:7202381 | Lac9g2541 | Lac-Chr9:44060890 | 2.40E-72 | dispersed | |
Lac8g1055 | Lac-Chr8:21838413 | Lac13g0882 | Lac-Chr13:7202381 | 4.10E-09 | transposed | |
Lac1g2105 | Lac-Chr1:42541476 | Lac13g0882 | Lac-Chr13:7202381 | 2.50E-59 | wgd | |
Lac10g3053 | Lac-Chr10:45026310 | Lac13g0882 | Lac-Chr13:7202381 | 4.20E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23187 | PF00847 | AP2 | 5.70E-10 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0882 | K09284 | - | csv:101204131 | 622.468 |