Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0890 ATGGCTTACGTGGCCAAATGTACGAACTCTTCACCGACGCCGATCACTCTTCCAAACCCCTTATCTTACTCTCCCTCTTCTTCCTCCGCCGCCGCCGCCGCCAATTTTGCTTCGCCGCCCACTTCTCAGCCGTCGTCGCCTCCGCCGCCTGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCTTATTTCCCGCCGACGGAGCCCCTCAAGTTCACCATTGCTCATAGAGTCTTTGGCGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCTGAATCTCAAAGAACAGATGCAGTGAGTAGTATGGTATACGAAGCAAACGCACGTTTGCGAGATCCAGTATACGGTAGTGCGGGCGCGATATGCCAACTGCAAAAGCAAGTGAGCGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCGGAGGTAGCCAATATGCAACAGCAACAAGCCAACTTATTGGCCTTGATTTGCATGGAAATGAGGCAATCACCGGAGCCCGTTTGGCCACCGCAACTCGTCGACACCGCCTGCTTTCTCGACGACGCCACGCTTAGCTCGCCGTGGGAGCCGCTCTGGACATGA 624 56.25 MAYVAKCTNSSPTPITLPNPLSYSPSSSSAAAAANFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLVDTACFLDDATLSSPWEPLWT 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7301210 7302552 + Lag0040686.1 Lac13g0890 592046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0890 207 Coils Coil 135 169 - -
Lac13g0890 207 ProSiteProfiles LOB domain profile. 55 156 IPR004883 -
Lac13g0890 207 Pfam Lateral organ boundaries (LOB) domain 56 153 IPR004883 -
Lac13g0890 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 55 165 - -
Lac13g0890 207 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0890 Lac-Chr13:7301210 Lac7g2532 Lac-Chr7:43406229 1.80E-49 dispersed
Lac13g0890 Lac-Chr13:7301210 Lac9g2556 Lac-Chr9:44206803 9.70E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23188 PF03195 LOB 1.80E-40 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0890 - - - 0.0