Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0918 | ATGTCAAATTCCGAAACAGCCAACACCAATGGCGTCTCCAATGGCGCCTCCATCGACACCCACAAGAATCAGTCCTCTGCAAACGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGTCGTATCCGTATGCCCATCATCTGCGCCGCCCGTGTCTTCCAGCTCACTCGCGAACTCGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCTTCCATTATCGCCGCAACCGGCACCGGCACCACTCCCGCTAATTTCTCCTCCGTCTCTCTCTCCGTCAGAGGAAATGGCGGCTCCGCCTCCCTCTCTTCCCCTTCCTCCACTACCTCAACTCTCTCCCTCTCTCGCCCCCACGCTCTGTCTAGCCCCACGCCGTTTATCCTCGGCAAGCGCGTCCGCGCCGACGACGACACTAAGGACGATGCCTTGGGAGTGGGTCCGGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGCCAGGTGTGGAGCTTTGCCGCCGCCGCGGCAGCGGCGGCTCCGTCTGAGATGGTGGTTCAACAGGGGATTTCTCAGCAGGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGCGGTGGTTCCGGGCGGCGAGAAGATGACCCTCGCTGA | 783 | 62.45 | MSNSETANTNGVSNGASIDTHKNQSSANGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPHALSSPTPFILGKRVRADDDTKDDALGVGPAVGSIVGPTGPSGYWAIPARPDYGQVWSFAAAAAAAAPSEMVVQQGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR | 260 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7574322 | 7575104 | + | Lag0040714.1 | Lac13g0918 | 592074 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0918 | 260 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Lac13g0918 | 260 | MobiDBLite | consensus disorder prediction | 35 | 49 | - | - | |
| Lac13g0918 | 260 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Lac13g0918 | 260 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 13 | 158 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER) | |
| Lac13g0918 | 260 | ProSiteProfiles | TCP domain profile. | 38 | 92 | IPR017887 | - | |
| Lac13g0918 | 260 | MobiDBLite | consensus disorder prediction | 113 | 133 | - | - | |
| Lac13g0918 | 260 | Pfam | TCP family transcription factor | 38 | 121 | IPR017887 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0918 | Lac-Chr13:7574322 | Lac8g2023 | Lac-Chr8:38700712 | 7.60E-77 | dispersed | |
| Lac13g0918 | Lac-Chr13:7574322 | Lac8g2693 | Lac-Chr8:44409848 | 3.20E-59 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23189 | PF03634 | TCP | 2.90E-33 | No_clan | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0918 | K16221 | - | csv:101206050 | 399.053 |