Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0918 ATGTCAAATTCCGAAACAGCCAACACCAATGGCGTCTCCAATGGCGCCTCCATCGACACCCACAAGAATCAGTCCTCTGCAAACGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGTCGTATCCGTATGCCCATCATCTGCGCCGCCCGTGTCTTCCAGCTCACTCGCGAACTCGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCTTCCATTATCGCCGCAACCGGCACCGGCACCACTCCCGCTAATTTCTCCTCCGTCTCTCTCTCCGTCAGAGGAAATGGCGGCTCCGCCTCCCTCTCTTCCCCTTCCTCCACTACCTCAACTCTCTCCCTCTCTCGCCCCCACGCTCTGTCTAGCCCCACGCCGTTTATCCTCGGCAAGCGCGTCCGCGCCGACGACGACACTAAGGACGATGCCTTGGGAGTGGGTCCGGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGCCAGGTGTGGAGCTTTGCCGCCGCCGCGGCAGCGGCGGCTCCGTCTGAGATGGTGGTTCAACAGGGGATTTCTCAGCAGGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGCGGTGGTTCCGGGCGGCGAGAAGATGACCCTCGCTGA 783 62.45 MSNSETANTNGVSNGASIDTHKNQSSANGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPHALSSPTPFILGKRVRADDDTKDDALGVGPAVGSIVGPTGPSGYWAIPARPDYGQVWSFAAAAAAAAPSEMVVQQGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 260
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 7574322 7575104 + Lag0040714.1 Lac13g0918 592074
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0918 260 MobiDBLite consensus disorder prediction 1 31 - -
Lac13g0918 260 MobiDBLite consensus disorder prediction 35 49 - -
Lac13g0918 260 MobiDBLite consensus disorder prediction 1 49 - -
Lac13g0918 260 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 158 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Lac13g0918 260 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Lac13g0918 260 MobiDBLite consensus disorder prediction 113 133 - -
Lac13g0918 260 Pfam TCP family transcription factor 38 121 IPR017887 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0918 Lac-Chr13:7574322 Lac8g2023 Lac-Chr8:38700712 7.60E-77 dispersed
Lac13g0918 Lac-Chr13:7574322 Lac8g2693 Lac-Chr8:44409848 3.20E-59 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23189 PF03634 TCP 2.90E-33 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0918 K16221 - csv:101206050 399.053