Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0924 ATGGTTCTCGAAGTTGCGGTCAAGGCTGCCGTTGGCGCCCCCGATGTGATCGGGGACTGCCCTTTCAGCCAAAGGGTTCTCTTAACTTTAGAGGAGAAGAAAGTTGCTTACAAGAGGCATCTCATCAATCTCTCTGACAAACCCAGTTGGTTCTTGGAAGTGAACCCTGAAGGGAAGGTGCCGGTTGTGAAGTTTGATGATAAATGGGTTTCTGATTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTATCCAGAGCCTTCGCTTGTTACTCCTCCTGAAGTTTCTTCTGTGGGATCAAAGATATTTGGTGCTTTTGTAACATTCTTGAAGAGCAAGGACCCGAATGATGGTTCAGAGAAGGCTTTCCTTGAAGAGTTGAAGGCGCTCAATGAGCATCTTAAGGCTCATGGTCCTTACGTCGCTGGACAGAAGGTAACTGCTGTTGATTTGAGTCTGGCACCAAAGTTGTACCATGTTGATGTTGCTCTCGGCCATTTTAAGAAGTGGGCTATCCCAAAGACTTAG 528 46.78 MVLEVAVKAAVGAPDVIGDCPFSQRVLLTLEEKKVAYKRHLINLSDKPSWFLEVNPEGKVPVVKFDDKWVSDSDVIVGILEEKYPEPSLVTPPEVSSVGSKIFGAFVTFLKSKDPNDGSEKAFLEELKALNEHLKAHGPYVAGQKVTAVDLSLAPKLYHVDVALGHFKKWAIPKT 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7647756 7650069 + Lag0040720.1 Lac13g0924 592080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0924 175 SUPERFAMILY Thioredoxin-like 19 87 IPR036249 -
Lac13g0924 175 SFLD Main (cytGST) 19 167 - -
Lac13g0924 175 Pfam Glutathione S-transferase, N-terminal domain 20 82 IPR004045 -
Lac13g0924 175 CDD GST_N_family 20 77 - -
Lac13g0924 175 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 3 174 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(InterPro)|GO:0045174(PANTHER)|GO:0098869(InterPro)
Lac13g0924 175 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
Lac13g0924 175 Gene3D Glutaredoxin 1 89 - -
Lac13g0924 175 FunFam Glutathione S-transferase DHAR3, chloroplastic 90 175 - -
Lac13g0924 175 Pfam Glutathione S-transferase, C-terminal domain 119 167 - -
Lac13g0924 175 SUPERFAMILY GST C-terminal domain-like 84 174 IPR036282 -
Lac13g0924 175 Gene3D - 90 175 - -
Lac13g0924 175 SFLD Glutathione Transferase (cytosolic) 19 167 IPR040079 -
Lac13g0924 175 FunFam Glutathione S-transferase DHAR3 chloroplastic 1 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0924 K21888 - - mdm:103435916 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0924 Lac-Chr13:7647756 Lac13g0926 Lac-Chr13:7669753 4.30E-84 dispersed
Lac13g0924 Lac-Chr13:7647756 Lac13g0925 Lac-Chr13:7661525 4.00E-90 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g2409 . 3 208 Glutathione S-transferase Gene Family AT4G02520 60.3 2.9e-66 249.2
Lac4g2408 . 5 210 Glutathione S-transferase Gene Family AT4G02520 56.5 6.9e-60 228.0
Lac4g2409 . 3 208 Glutathione S-transferase Gene Family AT2G02930 60.8 3.8e-66 248.8
Lac4g2408 . 5 211 Glutathione S-transferase Gene Family AT2G02930 57.1 1.4e-60 230.3
Lac4g2409 . 1 210 Glutathione S-transferase Gene Family AT1G02950 56.4 1.0e-62 237.7
Lac4g2408 . 6 215 Glutathione S-transferase Gene Family AT1G02950 53.1 2.9e-57 219.5
Lac4g2409 . 3 208 Glutathione S-transferase Gene Family AT1G02930 60.2 2.8e-66 249.2
Lac4g2408 . 5 211 Glutathione S-transferase Gene Family AT1G02930 55.6 4.7e-61 231.9
Lac4g2409 . 3 208 Glutathione S-transferase Gene Family AT1G02920 61.7 8.9e-68 254.2
Lac4g2408 . 5 211 Glutathione S-transferase Gene Family AT1G02920 57.0 1.1e-62 237.3
Lac4g2408 . 5 215 Glutathione S-transferase Gene Family AT2G47730 59.9 2.7e-66 249.6
Lac4g2409 . 2 214 Glutathione S-transferase Gene Family AT2G47730 58.9 8.0e-66 248.1
Lac4g2407 . 4 172 Glutathione S-transferase Gene Family AT3G62760 60.9 6.0e-59 224.9
Lac4g2409 . 18 207 Glutathione S-transferase Gene Family AT1G49860 50.5 5.2e-46 182.2
Lac1g1929 . 3 213 Glutathione S-transferase Gene Family AT3G09270 54.9 6.4e-64 241.5
Lac1g1943 . 4 213 Glutathione S-transferase Gene Family AT3G09270 54.0 6.0e-62 235.0
Lac1g1928 . 3 213 Glutathione S-transferase Gene Family AT3G09270 50.9 6.6e-61 231.5
Lac1g1947 . 3 214 Glutathione S-transferase Gene Family AT3G09270 51.9 8.6e-61 231.1
Lac1g1944 . 4 215 Glutathione S-transferase Gene Family AT3G09270 54.2 1.9e-60 229.9
Lac13g0259 . 4 218 Glutathione S-transferase Gene Family AT1G69930 52.3 2.9e-59 226.1
Lac13g0259 . 6 217 Glutathione S-transferase Gene Family AT1G69920 50.7 4.0e-54 209.1
Lac13g0259 . 1 217 Glutathione S-transferase Gene Family AT1G27130 51.6 1.9e-60 229.9
Lac13g0259 . 4 222 Glutathione S-transferase Gene Family AT1G59700 53.2 3.3e-63 239.2
Lac13g0259 . 1 222 Glutathione S-transferase Gene Family AT1G10370 63.4 5.1e-77 285.0
Lac13g0259 . 1 222 Glutathione S-transferase Gene Family AT1G10360 60.7 9.0e-74 274.2
Lac5g2359 . 1 215 Glutathione S-transferase Gene Family AT1G78380 71.2 1.1e-87 320.5
Lac5g2361 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.4 3.1e-87 318.9
Lac5g2358 . 1 216 Glutathione S-transferase Gene Family AT1G78380 66.2 1.3e-82 303.5
Lac5g2360 . 1 215 Glutathione S-transferase Gene Family AT1G78380 67.0 3.3e-81 298.9
Lac8g1986 . 4 221 Glutathione S-transferase Gene Family AT1G78380 55.5 8.7e-66 247.7
Lac5g2357 . 5 219 Glutathione S-transferase Gene Family AT1G78380 50.2 1.0e-58 224.2
Lac5g2361 . 1 215 Glutathione S-transferase Gene Family AT1G78370 64.2 1.6e-80 296.6
Lac5g2359 . 1 214 Glutathione S-transferase Gene Family AT1G78370 62.1 4.9e-77 285.0
Lac5g2360 . 1 216 Glutathione S-transferase Gene Family AT1G78370 63.4 3.2e-76 282.3
Lac5g2358 . 1 214 Glutathione S-transferase Gene Family AT1G78370 58.9 5.2e-71 265.0
Lac8g1986 . 7 219 Glutathione S-transferase Gene Family AT1G78370 52.6 2.2e-61 233.0
Lac5g2357 . 8 212 Glutathione S-transferase Gene Family AT1G78370 50.2 2.3e-55 213.0
Lac5g2361 . 1 214 Glutathione S-transferase Gene Family AT1G78340 66.4 1.1e-81 300.4
Lac5g2359 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 4.0e-79 292.0
Lac5g2360 . 1 215 Glutathione S-transferase Gene Family AT1G78340 63.7 3.2e-76 282.3
Lac5g2358 . 1 216 Glutathione S-transferase Gene Family AT1G78340 62.0 4.6e-75 278.5
Lac8g1986 . 4 219 Glutathione S-transferase Gene Family AT1G78340 52.3 9.9e-62 234.2
Lac5g2357 . 5 212 Glutathione S-transferase Gene Family AT1G78340 50.5 8.7e-58 221.1
Lac5g2361 . 1 219 Glutathione S-transferase Gene Family AT1G78320 52.7 3.1e-59 225.7
Lac5g2358 . 1 214 Glutathione S-transferase Gene Family AT1G78320 50.9 2.2e-57 219.5
Lac5g2359 . 1 214 Glutathione S-transferase Gene Family AT1G78320 51.9 2.2e-57 219.5
Lac5g2360 . 1 220 Glutathione S-transferase Gene Family AT1G78320 51.6 1.4e-56 216.9
Lac5g2361 . 1 219 Glutathione S-transferase Gene Family AT1G17180 67.6 4.3e-89 325.1
Lac5g2359 . 1 219 Glutathione S-transferase Gene Family AT1G17180 65.3 2.2e-85 312.8
Lac5g2360 . 1 220 Glutathione S-transferase Gene Family AT1G17180 64.5 7.9e-83 304.3
Lac5g2358 . 1 219 Glutathione S-transferase Gene Family AT1G17180 62.1 1.3e-80 297.0
Lac8g1986 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 7.9e-67 251.1
Lac5g2361 . 3 217 Glutathione S-transferase Gene Family AT1G17190 56.3 5.6e-73 271.6
Lac5g2360 . 3 218 Glutathione S-transferase Gene Family AT1G17190 57.4 2.4e-71 266.2
Lac5g2359 . 3 217 Glutathione S-transferase Gene Family AT1G17190 56.3 4.0e-71 265.4
Lac5g2358 . 3 217 Glutathione S-transferase Gene Family AT1G17190 54.0 1.4e-68 256.9
Lac5g2357 . 4 216 Glutathione S-transferase Gene Family AT1G17190 50.2 1.8e-55 213.4
Lac5g2361 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.0 5.1e-69 258.5
Lac5g2360 . 3 215 Glutathione S-transferase Gene Family AT3G43800 56.2 1.5e-68 256.9
Lac5g2359 . 3 214 Glutathione S-transferase Gene Family AT3G43800 54.2 8.1e-67 251.1
Lac5g2358 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.6 1.1e-66 250.8
Lac5g2361 . 4 219 Glutathione S-transferase Gene Family AT1G53680 56.9 4.3e-68 255.4
Lac5g2359 . 4 219 Glutathione S-transferase Gene Family AT1G53680 55.5 8.9e-66 247.7
Lac5g2360 . 4 220 Glutathione S-transferase Gene Family AT1G53680 54.1 1.5e-65 246.9
Lac8g1986 . 1 224 Glutathione S-transferase Gene Family AT1G53680 54.4 4.9e-64 241.9
Lac5g2358 . 4 219 Glutathione S-transferase Gene Family AT1G53680 52.3 2.3e-61 233.0
Lac5g2357 . 3 223 Glutathione S-transferase Gene Family AT1G53680 52.0 6.2e-59 224.9
Lac9g0139 . 51 221 Glutathione S-transferase Gene Family AT2G02390 67.3 2.7e-63 239.2
Lac9g0136 . 99 266 Glutathione S-transferase Gene Family AT2G02390 64.9 1.7e-57 219.9
Lac7g0325 . 61 227 Glutathione S-transferase Gene Family AT2G02390 52.7 2.7e-47 186.0
Lac9g0139 . 10 220 Glutathione S-transferase Gene Family AT2G02380 64.5 3.8e-77 285.4
Lac9g0136 . 58 264 Glutathione S-transferase Gene Family AT2G02380 61.4 7.0e-71 264.6
Lac7g0325 . 18 226 Glutathione S-transferase Gene Family AT2G02380 53.6 1.1e-60 230.7
Lac5g2164 . 1 237 Glutathione S-transferase Gene Family AT5G41210 67.5 1.8e-91 333.2
Lac5g2164 . 1 237 Glutathione S-transferase Gene Family AT5G41240 66.7 1.5e-88 324.7
Lac10g3062 . 9 235 Glutathione S-transferase Gene Family AT5G02780 70.2 1.6e-89 326.6
Lac10g3061 . 13 232 Glutathione S-transferase Gene Family AT5G02780 67.6 1.2e-81 300.4
Lac13g0871 . 75 294 Glutathione S-transferase Gene Family AT5G02780 66.2 1.0e-80 297.4
Lac10g3060 . 138 342 Glutathione S-transferase Gene Family AT5G02780 64.3 3.0e-72 269.2
Lac13g0871 . 20 292 Glutathione S-transferase Gene Family AT3G55040 60.9 4.1e-87 318.9
Lac10g3062 . 4 233 Glutathione S-transferase Gene Family AT3G55040 60.9 1.8e-79 293.5
Lac10g3061 . 3 230 Glutathione S-transferase Gene Family AT3G55040 57.6 1.1e-76 284.3
Lac10g3060 . 148 342 Glutathione S-transferase Gene Family AT3G55040 56.6 1.4e-63 240.7
Lac10g3062 . 9 235 Glutathione S-transferase Gene Family AT5G02790 71.8 7.3e-95 344.4
Lac10g3061 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 9.2e-90 327.4
Lac13g0871 . 67 294 Glutathione S-transferase Gene Family AT5G02790 63.3 3.8e-83 305.4
Lac10g3060 . 142 342 Glutathione S-transferase Gene Family AT5G02790 65.8 1.4e-74 276.9
Lac13g0925 . 189 400 Glutathione S-transferase Gene Family AT1G19570 66.7 2.2e-82 302.8
Lac13g0926 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.5 8.4e-82 300.8
Lac11g0205 . 64 270 Glutathione S-transferase Gene Family AT1G19570 61.1 6.5e-74 274.6
Lac13g0924 . 1 175 Glutathione S-transferase Gene Family AT1G19570 72.7 6.5e-74 274.6
Lac13g0926 . 1 212 Glutathione S-transferase Gene Family AT1G75270 72.3 2.4e-89 325.9
Lac13g0925 . 189 399 Glutathione S-transferase Gene Family AT1G75270 71.2 1.1e-86 317.0
Lac13g0924 . 1 175 Glutathione S-transferase Gene Family AT1G75270 76.7 1.1e-78 290.4
Lac11g0205 . 64 270 Glutathione S-transferase Gene Family AT1G75270 62.5 1.0e-74 277.3
Lac11g0205 . 9 270 Glutathione S-transferase Gene Family AT5G16710 68.9 6.8e-102 367.9
Lac13g0925 . 191 398 Glutathione S-transferase Gene Family AT5G16710 61.5 4.1e-75 278.9
Lac13g0926 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 2.1e-71 266.5
Lac13g0924 . 3 173 Glutathione S-transferase Gene Family AT5G16710 61.4 1.8e-62 236.9
Lac2g0964 . 113 368 Glutathione S-transferase Gene Family AT1G77290 70.3 1.1e-102 370.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003067 2 1 1 1 2 1 3 1 1 1 1 1 3 1 1 4 1 2 2 1 1 2 2 3 2 1 2 5 2 0 51