Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0933 ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCCGCGGTGCAGCTTTCTGGTGGCAGTCGCAAATTGTTCTGGCGTTCGGCCTCATGGTCTGCGTCACGTTCCTCCCTTCACCATCCCGAAGTCAACAAAGATGGTGGAGACCCGAATGGGAATCTTGGTGATAGTAATGGACCAAGCCGAATCTTCCCCGCTCCATTGACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTGCAGCCTTTGTCGATAGCCCGGCGAAGCTTAGATGAATGGCCGAAGGCAGGGTCGGACGATATAGGCGAGTGGCCACAACCTCCTACTCCAAGTGGCAGAGGAAATGGCGAGAGGTTGAAACTTGATTTGTCAACAATTCAGAGGAACCCGGATAAGAATTGTGGGCTTGTCAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGCTCAAAAGTGGCGGAACATGTATATCTTGGTGGAGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATCACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCGGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTATGGTTGCAGGATAGCCCATCTGAGGATATCACTAGTATTCTTTATGACGTTTTTGACTATTTTGAAGATGTTAGAGAACAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCTCGGTCCACGTCATTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGACGATGCATTTCAATATGTGAAGGCAGCAAGAGGTATCGCTGACCCGAATATGGGTTTTGCTTGCCAGTTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGAATGTATAGAGTTGCCCCACATTCACCATATGATCCTTTGCATCTGGTCCCGAAAATGTTGAATGATCCTTCACCCTCTGCTCTGGATTCTAGAGGTGCATTTATCATTCATATACCCTCTGCTATATTTGTTTGGATCGGTAAGAACTGTGAAGCAATCATGGAAAGGGATGCAAGGGGAGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTCTAATGGATAAATCTAACAGTAAAATAAATCTTGGGGAATTAAAAGGTAAGCCTTCTCCAGGCGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTCCTTCGTCTGAGAATGAGCATGAGACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGGAATATGAAAGAGTTTGTATCAGCTCCTCGAATATCTCTCTCTAGGGTCTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCAAAGTCTTCATCGCCTTCAGCATTTTCTTTGTCTTCATCATCTTCTTCACCCATCTATCTTTCTCCAGACTCCCTCTCTTCTGATTCAAGTTCAAGTTCAAGTTCAAGTTCCAAGTATTTCTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTCCAATTTCTTCATCTCTGTCTAGTTTTTCAAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTGTGCCCAATGGTCCAGAAACTCGTGATGCAGCCCCTCTGGAATCAAGTTCTAGCTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCACTTGCAGAGCGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATGGTAAGAGGAAAAATAAGATTTCCTGCTCTCTTAATGTATCATCAATTAATATGAAAAATGGCTCAGAGCCTATGGATAGGGTTGTAAATGAACCGACAAGTTCCACTCAGAATTTCAAGAATACCGAAAATGGAATGGATGTAAGGGTAGGTAGTGTGGCCTCATGCCAGCAGGAAACTAAAGTTGATGGACAATCTGCTTCATGGAAAGGCTATCCCAAACCTTTTGAAGAAGACATGGTGTCCACTGTGTCAAATGGGAAGCAAGATGATGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAGTTGGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGACGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTACCTCAGGTTCAAGTAAAGAGGGATAAAGACTTGGTTGATTTAGAAAAGATAGACTGGATTAAAGTTGGTCAATATGTACTTACTGAAATAGGTCTGCCAGAAAATACAGAAATTAAGATCATTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTGTTGTAG 2565 43.0 MVGSEEDSGTSGAAVQLSGGSRKLFWRSASWSASRSSLHHPEVNKDGGDPNGNLGDSNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELKGKPSPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMKEFVSAPRISLSRVYSDSLMMVHFSAKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSSSSSSSKYFSESSLDSPSASSPSVPISSSLSSFSNMSLISSNSSLESVPNGPETRDAAPLESSSSSFSFPSKKFSPSLAERRGSAKSLTLPTMPSKIRATNSASRFLATQEDGKRKNKISCSLNVSSINMKNGSEPMDRVVNEPTSSTQNFKNTENGMDVRVGSVASCQQETKVDGQSASWKGYPKPFEEDMVSTVSNGKQDDEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGSSFDHDLPQVQVKRDKDLVDLEKIDWIKVGQYVLTEIGLPENTEIKIIKEGEETEEFLARLSLL 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7744620 7748192 + Lag0040729.1 Lac13g0933 592089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0933 854 PANTHER MKPA PROTEIN 14 849 - -
Lac13g0933 854 MobiDBLite consensus disorder prediction 33 70 - -
Lac13g0933 854 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Lac13g0933 854 CDD DSP 154 288 - -
Lac13g0933 854 MobiDBLite consensus disorder prediction 528 557 - -
Lac13g0933 854 MobiDBLite consensus disorder prediction 100 120 - -
Lac13g0933 854 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470(InterPro)
Lac13g0933 854 MobiDBLite consensus disorder prediction 577 629 - -
Lac13g0933 854 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311(InterPro)
Lac13g0933 854 MobiDBLite consensus disorder prediction 592 608 - -
Lac13g0933 854 SMART VILL_6 302 399 IPR007122 GO:0051015(InterPro)
Lac13g0933 854 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311(InterPro)
Lac13g0933 854 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Lac13g0933 854 SMART dsp_5 153 292 IPR020422 GO:0006470(InterPro)
Lac13g0933 854 Gene3D Severin 304 399 IPR029006 -
Lac13g0933 854 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0016311(InterPro)
Lac13g0933 854 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0933 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0147 Lac-Chr13:1063226 Lac13g0933 Lac-Chr13:7744620 8.30E-158 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004035 1 5 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 44