Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0933 ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCCGCGGTGCAGCTTTCTGGTGGCAGTCGCAAATTGTTCTGGCGTTCGGCCTCATGGTCTGCGTCACGTTCCTCCCTTCACCATCCCGAAGTCAACAAAGATGGTGGAGACCCGAATGGGAATCTTGGTGATAGTAATGGACCAAGCCGAATCTTCCCCGCTCCATTGACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTGCAGCCTTTGTCGATAGCCCGGCGAAGCTTAGATGAATGGCCGAAGGCAGGGTCGGACGATATAGGCGAGTGGCCACAACCTCCTACTCCAAGTGGCAGAGGAAATGGCGAGAGGTTGAAACTTGATTTGTCAACAATTCAGAGGAACCCGGATAAGAATTGTGGGCTTGTCAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGCTCAAAAGTGGCGGAACATGTATATCTTGGTGGAGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATCACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCGGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTATGGTTGCAGGATAGCCCATCTGAGGATATCACTAGTATTCTTTATGACGTTTTTGACTATTTTGAAGATGTTAGAGAACAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCTCGGTCCACGTCATTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGACGATGCATTTCAATATGTGAAGGCAGCAAGAGGTATCGCTGACCCGAATATGGGTTTTGCTTGCCAGTTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGAATGTATAGAGTTGCCCCACATTCACCATATGATCCTTTGCATCTGGTCCCGAAAATGTTGAATGATCCTTCACCCTCTGCTCTGGATTCTAGAGGTGCATTTATCATTCATATACCCTCTGCTATATTTGTTTGGATCGGTAAGAACTGTGAAGCAATCATGGAAAGGGATGCAAGGGGAGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTCTAATGGATAAATCTAACAGTAAAATAAATCTTGGGGAATTAAAAGGTAAGCCTTCTCCAGGCGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTCCTTCGTCTGAGAATGAGCATGAGACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGGAATATGAAAGAGTTTGTATCAGCTCCTCGAATATCTCTCTCTAGGGTCTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCAAAGTCTTCATCGCCTTCAGCATTTTCTTTGTCTTCATCATCTTCTTCACCCATCTATCTTTCTCCAGACTCCCTCTCTTCTGATTCAAGTTCAAGTTCAAGTTCAAGTTCCAAGTATTTCTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTCCAATTTCTTCATCTCTGTCTAGTTTTTCAAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTGTGCCCAATGGTCCAGAAACTCGTGATGCAGCCCCTCTGGAATCAAGTTCTAGCTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCACTTGCAGAGCGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATGGTAAGAGGAAAAATAAGATTTCCTGCTCTCTTAATGTATCATCAATTAATATGAAAAATGGCTCAGAGCCTATGGATAGGGTTGTAAATGAACCGACAAGTTCCACTCAGAATTTCAAGAATACCGAAAATGGAATGGATGTAAGGGTAGGTAGTGTGGCCTCATGCCAGCAGGAAACTAAAGTTGATGGACAATCTGCTTCATGGAAAGGCTATCCCAAACCTTTTGAAGAAGACATGGTGTCCACTGTGTCAAATGGGAAGCAAGATGATGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAGTTGGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGACGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTACCTCAGGTTCAAGTAAAGAGGGATAAAGACTTGGTTGATTTAGAAAAGATAGACTGGATTAAAGTTGGTCAATATGTACTTACTGAAATAGGTCTGCCAGAAAATACAGAAATTAAGATCATTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTGTTGTAG 2565 43.0 MVGSEEDSGTSGAAVQLSGGSRKLFWRSASWSASRSSLHHPEVNKDGGDPNGNLGDSNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELKGKPSPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMKEFVSAPRISLSRVYSDSLMMVHFSAKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSSSSSSSKYFSESSLDSPSASSPSVPISSSLSSFSNMSLISSNSSLESVPNGPETRDAAPLESSSSSFSFPSKKFSPSLAERRGSAKSLTLPTMPSKIRATNSASRFLATQEDGKRKNKISCSLNVSSINMKNGSEPMDRVVNEPTSSTQNFKNTENGMDVRVGSVASCQQETKVDGQSASWKGYPKPFEEDMVSTVSNGKQDDEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGSSFDHDLPQVQVKRDKDLVDLEKIDWIKVGQYVLTEIGLPENTEIKIIKEGEETEEFLARLSLL 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7744620 7748192 + Lag0040729.1 Lac13g0933 592089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0933 854 PANTHER MKPA PROTEIN 14 849 - -
Lac13g0933 854 MobiDBLite consensus disorder prediction 33 70 - -
Lac13g0933 854 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Lac13g0933 854 CDD DSP 154 288 - -
Lac13g0933 854 MobiDBLite consensus disorder prediction 528 557 - -
Lac13g0933 854 MobiDBLite consensus disorder prediction 100 120 - -
Lac13g0933 854 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470(InterPro)
Lac13g0933 854 MobiDBLite consensus disorder prediction 577 629 - -
Lac13g0933 854 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311(InterPro)
Lac13g0933 854 MobiDBLite consensus disorder prediction 592 608 - -
Lac13g0933 854 SMART VILL_6 302 399 IPR007122 GO:0051015(InterPro)
Lac13g0933 854 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311(InterPro)
Lac13g0933 854 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Lac13g0933 854 SMART dsp_5 153 292 IPR020422 GO:0006470(InterPro)
Lac13g0933 854 Gene3D Severin 304 399 IPR029006 -
Lac13g0933 854 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0016311(InterPro)
Lac13g0933 854 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0147 Lac-Chr13:1063226 Lac13g0933 Lac-Chr13:7744620 8.30E-158 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0933 - - - 0.0