Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0962 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAGAATTGAAAACAAGCGTGGCCATCAATGGTTTATGGATGGCAGTGCTCAAGAGCTATTCAGTAGCAAGAAGCAAGCAATAGAAACTGTAAATACTAGACCTGTTCCAGGAGTTCCGCACATGAATGTTTCTCCCTGGGAAAACTCTTCAAGTTTTCAGTCAGTTCCTGGGCCCTTCACTGATCGCCTCTTTGGCTCAGAGCCAATACGGACTGTCAACTTGGTTGATAGAGGCATCACTGTTGGAAATGCAAATATGGACATGGGAAGAAAGGAGTTCGAGAATCATTTTGCAAACAACCCATCAGTTGGCTTGTCCATGTCTCAATCCATTGAGGATTCATCATCATGCCTCAATTTTGGTGGAATTAGAAAAGTTAAAGTCAATCAAGTCAGGGATCCTGACATTGGCATGTCTGCCTCTTTAGGGCATGCCTATAGCAGGGGTGATAATGGTACAATTTCAATGGGTACAACATTTAACAAAAATCATGAGAACGCCATATCATTGGGTCAAACTTATAATGCCAGAGATGAGAATAGCATCTCGGTTGGCCCTGCATTTCACAAGACAGATGACAATTTTATTTCAATGGGTCATGCTTTCAGCAAGGGTGATGGAAATTTTATTACAATTGGTCATAACTATAGCAAGGGAGACAATAGCATCCTGTCAATGAGTCAGCCTTTTGACAAGGGGGATGATTCTTTTATTTCAATGGGTCAGTCTTATGAGAAGGCCGAGGGCAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGCATGAAAATTTTATCTCCATGGGGCCAACCTATAGTAAGGCAGGTGATACTTTCATTTCAATGGCTTCCTCCTACAATAAGGGAAATGATGATAGCTTATCAATGGGTCCAACCTATGACAAGGTGAACTCTGACATTGTACAAGTGGGTCCTAAATATGACAAAGCAGATTCTGGTGCTGTATCTATGGCTCACAACTATCATAAGGGTGAGAGTAATACCATATCTTTTGGAGGTTTCGAAGATGAGAATGCCACAGATAATCCTTCTGGTGGGATCATTAGCAGTTACGACTTGTTGATGGCTAATCAGGCTGCTGCCCAAGCATCAGACGTGTCGACCCTGAGAGATTCAGTTGATCCTAATGTGGAAGTAAACATTAACAATGCCACAAAAGTCGATGGTAAAATCGATACAAGTTCCAGGAATAAAGAATCTAGGACGACTAAGAAGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCCTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAATTATAAAAGGGACTGGATATTTGTGCAGCTGTGACAATTGCAATCATTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAATCACATTTATTTTGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCCCAGGAGTTGCTATTTGATGCAATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAATTATGCCTTCTTGA 1755 41.2 MSFQHKSFWIPRDAGCLTDGEMNYDSSSRIENKRGHQWFMDGSAQELFSSKKQAIETVNTRPVPGVPHMNVSPWENSSSFQSVPGPFTDRLFGSEPIRTVNLVDRGITVGNANMDMGRKEFENHFANNPSVGLSMSQSIEDSSSCLNFGGIRKVKVNQVRDPDIGMSASLGHAYSRGDNGTISMGTTFNKNHENAISLGQTYNARDENSISVGPAFHKTDDNFISMGHAFSKGDGNFITIGHNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGASYNKGHENFISMGPTYSKAGDTFISMASSYNKGNDDSLSMGPTYDKVNSDIVQVGPKYDKADSGAVSMAHNYHKGESNTISFGGFEDENATDNPSGGIISSYDLLMANQAAAQASDVSTLRDSVDPNVEVNINNATKVDGKIDTSSRNKESRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVIMPS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7982192 7987786 + Lag0040758.1 Lac13g0962 592118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0962 584 Gene3D - 152 298 IPR011049 -
Lac13g0962 584 Pfam Tify domain binding domain 477 532 IPR032308 -
Lac13g0962 584 MobiDBLite consensus disorder prediction 419 447 - -
Lac13g0962 584 PANTHER AUTOIMMUNE REGULATOR 6 565 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0962 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3089 Lac-Chr10:45299837 Lac13g0962 Lac-Chr13:7982192 4.90E-40 transposed
Lac13g0962 Lac-Chr13:7982192 Lac9g2501 Lac-Chr9:43743485 6.20E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1204 . 2 233 PHD Transcription Factor Family AT3G14980 64.7 7.7e-84 310.1
Lac10g3089 . 18 847 PHD Transcription Factor Family AT3G53680 53.7 7.0e-249 857.8
Lac13g0962 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.5e-37 153.7
Lac9g2501 . 509 635 PHD Transcription Factor Family AT3G53680 53.9 1.1e-36 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44