Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0963 ATGGAGGGCTTTGTGAGGTTTTTTGGTTTGGCAAAGCCATATTTGGGAGTTGTTTTTTTGCAGTTTGGTGCTGCTGGAATGGCGATTCTTGCAAAGTTGGCTATGGACAAAGGGATGAGCCAATATGTTTTCGCAACCTATCGTCAAGTTGTTGCTGCTCTTGTCATTGCTCCGTTTGCCATCGTCTTTGACAGGAAAGTGAGGACGAAGATGACCTTTTCATTGTTCTTCAAGATTGTGATGCTGGGGTTATTAGAGCCGGTGATTGATCAGAACTTGTACCTTATTGGTATGAAGTTAACAACAGCAACCTTTGCATCTGCCATGTGCAATGTTGTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGAAAGCCAAGCAAAAATCCTAGGAATCATAGTGACAGTTGGAGGAGCCATGGTTATGACCTTCATAAGAGGGCCAATGTTGAATCTGCCATGGACTAAACCCAACCAGCCCTCTGCTTCTTCAGGTGGTTCTGCATATCACCAAAGCCCACTCAAGGGCTCCCTCATGATTGCAGCTGGCTGCATTGCCTGGTCAGCTTTCATTGTTCTTCAGGCGACGACGTTGAAAGTGTACCCAGCGGAGTTGTCGCTTACGGCATTGATATGCTTGGTGGGCACCATTGGAAACTCTGTTGTGGCTTTGATCGTGAACAAGGGCAACCCTGCTGCTTGGTCCTTGCACTTTGACACACAGCTTCTGGCTGTGGCTTATACCGGAGTAATATGTTCAGGGGTAGCATATTATATTCAAGGAGTGGTGATGCAAACAAAAGGACCTGTTTTTGTTACTGCATTCTTTCCTCTAAGCATGATTATTATTGCAATCATGAGCTCCTTCATCTTATCTGAGATAATGTTCTTGGGCAGGATCACTGGAGCAGTGACCATAATCATTGGCTTGTACCTGGTTTTGTGGGGCAAAAGAAAAGATCAACTTTCAGTTAAATTAGGCTGTGACAACATAACACCTGGTGATCAACAAATGACTGTAAAGGATGAGGCTTCGAAGACGGTTCGATCAAATGAAGAATCGGTGGTGCTTGATGTTGCCAAAGAGGAGACAAATTGA 1131 44.65 MEGFVRFFGLAKPYLGVVFLQFGAAGMAILAKLAMDKGMSQYVFATYRQVVAALVIAPFAIVFDRKVRTKMTFSLFFKIVMLGLLEPVIDQNLYLIGMKLTTATFASAMCNVVPAFAFLMAWACRLEKVNILKRESQAKILGIIVTVGGAMVMTFIRGPMLNLPWTKPNQPSASSGGSAYHQSPLKGSLMIAAGCIAWSAFIVLQATTLKVYPAELSLTALICLVGTIGNSVVALIVNKGNPAAWSLHFDTQLLAVAYTGVICSGVAYYIQGVVMQTKGPVFVTAFFPLSMIIIAIMSSFILSEIMFLGRITGAVTIIIGLYLVLWGKRKDQLSVKLGCDNITPGDQQMTVKDEASKTVRSNEESVVLDVAKEETN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7988948 7994000 - Lag0040759.1 Lac13g0963 592119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0963 376 PANTHER WAT1-RELATED PROTEIN 17 348 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac13g0963 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 330 - -
Lac13g0963 376 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
Lac13g0963 376 Pfam EamA-like transporter family 15 154 IPR000620 GO:0016020(InterPro)
Lac13g0963 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0963 Lac-Chr13:7988948 Lac13g0965 Lac-Chr13:8019916 1.90E-161 dispersed
Lac13g0963 Lac-Chr13:7988948 Lac13g0964 Lac-Chr13:8003598 1.10E-169 tandem
Lac1g2062 Lac-Chr1:42153373 Lac13g0963 Lac-Chr13:7988948 8.30E-109 wgd
Lac13g0963 Lac-Chr13:7988948 Lac8g2482 Lac-Chr8:42723977 3.00E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0963 - - - 0.0