Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0964 ATGGAGGGTTTTGTGAGGTCTTTTGGTTTGGCAAAGCCATATCTGGGAGTTGTTTTTATGCAGTTTGGTTTTGCTGGAATGTCCATTCTTGCAAAGTCAGCTTTGGACAAGGGGATGAGCCAATATGTTTTTGTGGTTTATCGTCAAGCCGTTGCTACTCTTGTCGTTGCTCCTTTTGCCATCGTCTTTGATAGGAAAGCAAGGACAAAGATGACTTTTTCATTGTTCTTCAAGATTGTGATGCTGGGTTTATTAGAGCCGGTGATCGATCAGAATTTGTACTATACTGGTATGAAGTTCACAACAGCAACCTTTGCAACTGCCATGTGCAATGTTGTACCAGCTTTTGCTTTCCTCATGGCTTGGGTTTGCAGGCTTGAGAAAGTGAGCATTTTGAAAAGGGGAAGCCAAGCAAAAATTCTAGGAACCATAGTGACTGTAGGAGGAGCCATGATCATGACATTCATAAGAGGACCCATGTTGAATCTGCCATGGACTAAACCCAACCAGCCCTCTGCTCCTTCAGGTGCTGCTGCACATCACCAAAGCCCAATCAAGGGCTCCCTCATGATTGCAACTGGCTGCATTTGCTGGGCAGCTTTCATCACTCTTCAGGCGATTACATTGAAAGCGTACCCGGCGGAGTTGTCGCTTACGGCATTGATATGCTTGGTGGGCACCATTGGAAGCTCTGGGGTGGCTTTGATCATGGACAGGGGGAACCCTTCTGCTTGGGCTTTGCACTTTGACAGTCAGCTTCTAGCTGTTGTTTATGCTGGAGTAATATGCTCAGGAGTAACTTATTATATTCAAGGAGTGGTGATGCAGACAAAAGGACCTGTGTTTGTCACTGCATTCAATCCTCTGAGCATGATTCTTGTTGCAATCATGAGCTCCTTCATCTTGTCTGAGATATTGTTCTTGGGCAGGATTATTGGAGCAGTGTCCATTGTCATTGGCTTGTACTTGGTTTTGTGGGGCAAAAGCAAAGATCAAGTTTCAGTTAAATCAGAGTGTAATAAAGTAACACCTTCTGAGCAGCAAATGGTCAGTGGAAAGGATGAGGCTTCGAGGACGGTTGAATCAAATGAAGAATTTGTGGTTCTTGATGTTGCCAAAGAGGAGACAAATTGA 1134 44.62 MEGFVRSFGLAKPYLGVVFMQFGFAGMSILAKSALDKGMSQYVFVVYRQAVATLVVAPFAIVFDRKARTKMTFSLFFKIVMLGLLEPVIDQNLYYTGMKFTTATFATAMCNVVPAFAFLMAWVCRLEKVSILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKPNQPSAPSGAAAHHQSPIKGSLMIATGCICWAAFITLQAITLKAYPAELSLTALICLVGTIGSSGVALIMDRGNPSAWALHFDSQLLAVVYAGVICSGVTYYIQGVVMQTKGPVFVTAFNPLSMILVAIMSSFILSEILFLGRIIGAVSIVIGLYLVLWGKSKDQVSVKSECNKVTPSEQQMVSGKDEASRTVESNEEFVVLDVAKEETN 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8003598 8006983 - Lag0040760.1 Lac13g0964 592120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0964 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 330 - -
Lac13g0964 377 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
Lac13g0964 377 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020(InterPro)
Lac13g0964 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Lac13g0964 377 PANTHER WAT1-RELATED PROTEIN 17 343 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0964 Lac-Chr13:8003598 Lac13g0972 Lac-Chr13:8078859 3.10E-156 dispersed
Lac13g0963 Lac-Chr13:7988948 Lac13g0964 Lac-Chr13:8003598 1.10E-169 tandem
Lac13g0964 Lac-Chr13:8003598 Lac13g0965 Lac-Chr13:8019916 5.30E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0964 - - - 0.0