Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0965 ATGGAGGGTTTTGTGAGGCTTCTGAGTTTGGCTAAGCCATATGTGGGAGTAGTTTTTCTGCAGTGTGGTTTTGCTGGAATGGCGATTCTTACAAAGTCAGCTTTGGACAAGGGAATGAGCCCATATGTTTTTGTGGCTTATCGTCAAGCTGTTGCTACTCTCGTCATTGCTCCCTTTGCCATCGTTTTTGACAGGGAGGCGAGGACGAAGATGACCTTTTCATTGTTCTTCAAGATTGTGATGCTAGGTTTATTAGAACCGGTGATTGATCAAGACTTATACTATACTGGTATGAAGTTCACAACAGCAACCTTTGCGGCTGCCATGTGCAATGTTGTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTTCAGACTTGAGAAAGTGAACATTTTTAAAAGGAGAAGCCAAGCAAAAATTCTAGGAACAATGGTGACAGTAGGAGGAGCCATGATTATGACATTCATAAGAGGGCCAATGTTGAATCTGCCATGGACTAAACCCAACCAGCCCTCTGCTTCTTCAGGTGTTGCTGCAAATCACCAAAGCCCAGTCAAGGGCTCCCTCATGATTGCAACTGGCTGCCTTTGTTGGTCAGCTTTCTTCATTCTTCAGGCAATTACATTGAAAACGTACCCGGCGGAGTTGTCGCTTACGACATTGATCTGTTTGGTGGGCAGCATTGGGAACTTTGGGGTAGCCTTGATCATGGACAAGGGGAACCCTACTGCTTGGTCTTTGCACTTTGACCGTCAGCTTCTGGCTGTTGTTTATGCTGGAGTAATATGTTCCGGGGTAGCTTTTTATATTCAAGGGGTGGTGATGCAGACAAAAGGACCTGTGTTTGTCTCTGCATTCAATCCTTTGAGCATGGTTATTGTTGCAATCCTGAGCTCTTTCATCTTGTCTGAGATAATGTTCTTGGGCAGGATTATTGGAGCAGTGGCCATTAGCGCTGGTTTGTACCTGGTTTTGTGGGGCAAAAGCAAAGATCAGTTTTCAGTTAAATCAAACTCTGATAAGATAACATCTTGTGAGCAACAAATGACTGAAAAAGATGAGGCTTCGAAGACAATTCAATCAAATGAAGAATTTGTGGCGTTTGATGTTGAAAAAGAGGAGACAAATCGATGA 1134 43.92 MEGFVRLLSLAKPYVGVVFLQCGFAGMAILTKSALDKGMSPYVFVAYRQAVATLVIAPFAIVFDREARTKMTFSLFFKIVMLGLLEPVIDQDLYYTGMKFTTATFAAAMCNVVPAFAFLMAWAFRLEKVNIFKRRSQAKILGTMVTVGGAMIMTFIRGPMLNLPWTKPNQPSASSGVAANHQSPVKGSLMIATGCLCWSAFFILQAITLKTYPAELSLTTLICLVGSIGNFGVALIMDKGNPTAWSLHFDRQLLAVVYAGVICSGVAFYIQGVVMQTKGPVFVSAFNPLSMVIVAILSSFILSEIMFLGRIIGAVAISAGLYLVLWGKSKDQFSVKSNSDKITSCEQQMTEKDEASKTIQSNEEFVAFDVEKEETNR 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8019916 8025843 - Lag0040761.1 Lac13g0965 592121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0965 377 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
Lac13g0965 377 Pfam EamA-like transporter family 23 153 IPR000620 GO:0016020(InterPro)
Lac13g0965 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 330 - -
Lac13g0965 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Lac13g0965 377 PANTHER WAT1-RELATED PROTEIN 17 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0963 Lac-Chr13:7988948 Lac13g0965 Lac-Chr13:8019916 1.90E-161 dispersed
Lac13g0965 Lac-Chr13:8019916 Lac13g0972 Lac-Chr13:8078859 6.50E-146 dispersed
Lac13g0964 Lac-Chr13:8003598 Lac13g0965 Lac-Chr13:8019916 5.30E-172 tandem
Lac13g0965 Lac-Chr13:8019916 Lac13g0966 Lac-Chr13:8030057 5.90E-38 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0965 - - - 0.0