Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0972 ATGGAGGGTTTTGTGAGGTTTTTTGGTTTTGCAAAGCCATATTTGGGAATTGTTTTTGTGCAGCTTGGTTTTGCTGGACTGACCATTATTGCAAAGTCAGCTTTGGACATGGGGATGAGCCAATATGTTTTCGCAACCTATCGTCAAGCTGTTGCTACTCTTGTCATTGCTCCTTTTGCCATCGTCTTTGACAGGAAAGTGAGGACGAAGATGACCTTTTCATTGTTCTTCAAGATTGTGATGCTGGGGTTAATAGAGCCAGTAATCGATCAAAATTTGTACTATGCTGGTATGAAGTTAACAACAGCAACCTTTGCATCTGCCATGTGCAATGTTGTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGGGGGAAGACGTGGCCTGCAAGACAGTAAACCTGCACACCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCAAGCAGAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACTGGGGCATCCAGAGGTGGTGGGGACCAGACGAGACCGAACGGGCTCGGCCCGTGCGAGCGGGCCGAGGGTCGGTGGCCGAGGCCGAGCAGGGGGTCGGGCCTAAAACCCGACCCCTTCGGTCTTGGCCCGTCTCACTTGCCGGTTTTGCCCCCTTGGTCCATCTTTCAGCCCGATTACTCCCCGGTTGTCCTCGTCAGCTCCTTGCTTGAGAAAGTGAACATTTTGAAAAAGGGAAGCCAAGCAAAAATTCTTGGAACCATAGTGACAGTAGGAGGAGCCATGATCATGACATTCATAAGAGGGCCAATGTTGAATCTGCCATGGACTAAACCCAACCAGCCCTCTGCTTCTTCAGGCAGTGCTGCACATCACCAAAGCCCACTCAAGGGCTCCCTCATGATTGCAACTGCCTGCATCTGCTGGGCAGCTTTCACCATTCTTCAGGCGATTACATTGAAAGCGTACCCGGCGGAGTTGTCGCTTACGGCATTGATATGCTTGGTGGGCACCATTGGAGACGCTGGGGTGGCTTTGATCATGGAAAGGGGGAACCCTGCTGCTTGGTCTTTGCACTTTGACAATCAGCTTCTGGCTGTTGTTTATGCTGGAGTAATATGTTCAGGGGTAACTTATTATATTCAAGGAATGGTGATGCAGATAAAAGGGCCTGTGTTTGTCACTGCATTCAATCCTTTGAGCATGGTTCTTGTTGCAATCATGAGCTCCTTCATCTTGTCTGAGATCATGTTCTTGGGCAGGATTATTGGAGCAGTGTCCATTATCATTGGATTGTACTTGGTTTTGTGGGGCAAAAGCAAAGATCAAGTTTCAGTTAAATCGGACTGTGAAAAGATAGCACCTTGCAATTTTGGACCACCCGATATACAAGGAGCTGACAAGGACAACCGGGGAGAAATCGGGCCGAAAGATGAACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTCGGCCCGACCCCCTGCTCGGCCTCGGCCCATGGGCGAGGCCGAGCATATGGTCGGCCTCGGCCATGGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTTGGTTCCGCCTGGTTTGACCTAA 1623 51.45 MEGFVRFFGFAKPYLGIVFVQLGFAGLTIIAKSALDMGMSQYVFATYRQAVATLVIAPFAIVFDRKVRTKMTFSLFFKIVMLGLIEPVIDQNLYYAGMKLTTATFASAMCNVVPAFAFLMAWACRGEDVACKTVNLHTGVVLATPAPMLKSASRTVGRGKVKPGETGASRGGGDQTRPNGLGPCERAEGRWPRPSRGSGLKPDPFGLGPSHLPVLPPWSIFQPDYSPVVLVSSLLEKVNILKKGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKPNQPSASSGSAAHHQSPLKGSLMIATACICWAAFTILQAITLKAYPAELSLTALICLVGTIGDAGVALIMERGNPAAWSLHFDNQLLAVVYAGVICSGVTYYIQGMVMQIKGPVFVTAFNPLSMVLVAIMSSFILSEIMFLGRIIGAVSIIIGLYLVLWGKSKDQVSVKSDCEKIAPCNFGPPDIQGADKDNRGEIGPKDEPRRQNRQMGRAKTEGVGFSARPPARPRPMGEAEHMVGLGHGPSPFDAVWSPPPLAALVPPGLT 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8078859 8084027 - Lag0040768.1 Lac13g0972 592128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0972 540 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 128 - -
Lac13g0972 540 MobiDBLite consensus disorder prediction 464 486 - -
Lac13g0972 540 MobiDBLite consensus disorder prediction 153 203 - -
Lac13g0972 540 PANTHER WAT1-RELATED PROTEIN 234 445 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac13g0972 540 SUPERFAMILY Multidrug resistance efflux transporter EmrE 358 438 - -
Lac13g0972 540 MobiDBLite consensus disorder prediction 455 515 - -
Lac13g0972 540 Pfam EamA-like transporter family 295 434 IPR000620 GO:0016020(InterPro)
Lac13g0972 540 Pfam EamA-like transporter family 14 130 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0656 Lac-Chr13:4944449 Lac13g0972 Lac-Chr13:8078859 1.50E-48 dispersed
Lac13g0964 Lac-Chr13:8003598 Lac13g0972 Lac-Chr13:8078859 3.10E-156 dispersed
Lac13g0965 Lac-Chr13:8019916 Lac13g0972 Lac-Chr13:8078859 6.50E-146 dispersed
Lac13g0972 Lac-Chr13:8078859 Lac8g2482 Lac-Chr8:42723977 2.90E-94 dispersed
Lac6g0074 Lac-Chr6:670010 Lac13g0972 Lac-Chr13:8078859 1.30E-30 dispersed
Lac8g0548 Lac-Chr8:8179805 Lac13g0972 Lac-Chr13:8078859 1.60E-26 dispersed
Lac13g0966 Lac-Chr13:8030057 Lac13g0972 Lac-Chr13:8078859 4.80E-31 proximal
Lac12g0320 Lac-Chr12:3629241 Lac13g0972 Lac-Chr13:8078859 5.10E-28 transposed
Lac13g0972 Lac-Chr13:8078859 Lac6g1088 Lac-Chr6:10107011 6.70E-16 wgd
Lac13g0972 Lac-Chr13:8078859 Lac7g2708 Lac-Chr7:46170875 1.10E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0972 - - - 0.0