Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0981 ATGGCAGATTCTGAGGATATTCAGCCCCTCGTATGTGATAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCCCCAAGAGCTGTGTTTCCCAGTATTGTAGGCCGACCTCGCCACACTGGTGTTATGGTTGGCATGGGTCAGAAGGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTCTGAAATATCCAATTGAGCATGTTCTCCTAACTGAGGCTCCTCTTAACCCGAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACCTTCAACACTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCTCTTCCACACGCCATCCTTCGTCTTGACCTGGCAGGCCGTGATCTCACAGACAACCTGATGAAAATCCTCACTGAGCGTGGATACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGTCATATATTGCCCTTGATTATGAACAGGAGATGGAGACATCCAAGACCAGCTCATCCGTCGAGAAGAGCTACGAGTTGCCTGATGGACAGGTGATCACCATCGGCGCTGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAACCCTCCATGATCGGGATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGACATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCTCGCCCCTAGCAGCATGA 894 48.21 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISASPLAA 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8164917 8166315 - Lag0040777.1 Lac13g0981 592137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0981 297 FunFam Actin, alpha skeletal muscle 226 297 - -
Lac13g0981 297 ProSitePatterns Actins and actin-related proteins signature. 77 89 IPR020902 -
Lac13g0981 297 SUPERFAMILY Actin-like ATPase domain 120 292 IPR043129 -
Lac13g0981 297 Gene3D Actin; Chain A, domain 4 153 244 - -
Lac13g0981 297 FunFam Actin, alpha skeletal muscle 110 169 - -
Lac13g0981 297 FunFam Actin 12 87 109 - -
Lac13g0981 297 Gene3D - 111 292 - -
Lac13g0981 297 CDD NBD_sugar-kinase_HSP70_actin 10 154 - -
Lac13g0981 297 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lac13g0981 297 Pfam Actin 76 292 IPR004000 -
Lac13g0981 297 Pfam Actin 5 75 IPR004000 -
Lac13g0981 297 SMART actin_3 7 295 IPR004000 -
Lac13g0981 297 FunFam Actin, muscle 153 244 - -
Lac13g0981 297 Gene3D - 75 110 - -
Lac13g0981 297 SUPERFAMILY Actin-like ATPase domain 6 126 IPR043129 -
Lac13g0981 297 Gene3D - 3 74 - -
Lac13g0981 297 PANTHER ACTIN 8 75 IPR004000 -
Lac13g0981 297 PRINTS Actin signature 209 225 IPR004000 -
Lac13g0981 297 PRINTS Actin signature 88 101 IPR004000 -
Lac13g0981 297 PRINTS Actin signature 113 132 IPR004000 -
Lac13g0981 297 PRINTS Actin signature 19 30 IPR004000 -
Lac13g0981 297 FunFam Actin, alpha skeletal muscle 3 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0981 Lac-Chr13:8164917 Lac1g2407 Lac-Chr1:45486567 7.20E-156 dispersed
Lac1g2042 Lac-Chr1:41970900 Lac13g0981 Lac-Chr13:8164917 1.20E-156 wgd
Lac13g0981 Lac-Chr13:8164917 Lac7g1468 Lac-Chr7:15420607 3.80E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0981 K12314 - ssc:100152267 496.508