Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0995 ATGCCTGCCATTTCCATTTCTCTTCTCGCCGTTCTCCTCTCTGTGCTCGCCGTCGACGCTAGGATCCCCGGAGTTTACTCCGGTGGCCAGTGGCAGAGCGCTCATGCTACATTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGCGGTGCTTGCGGTTACGGTAACTTATACAGCCAAGGCTACGGCGTGAACACCGCGGCCTTGAGCACTGCTCTGTTCAATAACGGTTTGAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATTCCGGTAGTCCGTCGATCTTCATCACCGCCACAAACTTTTGCCCTCCGAACTACGCTCTTCCGAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATTGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGGAAACAGGGAGGAATCAGGTTCACAATCAACGGCTTCCGGTACTTCAACTTGGTGCTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCGAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAGAACTGGCAATCAAACGCCATCTTGGTTGGTCAGTCACTGTCGTTCAGGGTGACAGCCAGTGACCGCCGCACCTCCACTTCTTGGAACATCGTCCCCTCCAACTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTAA 774 56.2 MPAISISLLAVLLSVLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8319658 8321596 - Lag0040791.1 Lac13g0995 592151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0995 257 Gene3D - 163 255 IPR036749 -
Lac13g0995 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Lac13g0995 257 FunFam Expansin 20 159 - -
Lac13g0995 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Lac13g0995 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Lac13g0995 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Lac13g0995 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Lac13g0995 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Lac13g0995 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Lac13g0995 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Lac13g0995 257 Gene3D - 19 159 IPR036908 -
Lac13g0995 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Lac13g0995 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Lac13g0995 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 SMART dpbb_1 66 153 IPR007112 -
Lac13g0995 257 CDD DPBB_EXPA_N 30 158 - -
Lac13g0995 257 PANTHER EXPANSIN-A15 9 255 IPR002963 GO:0009664(InterPro)
Lac13g0995 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Lac13g0995 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Lac13g0995 257 FunFam Expansin 163 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0995 Lac-Chr13:8319658 Lac1g2050 Lac-Chr1:42040877 1.20E-135 dispersed
Lac12g0452 Lac-Chr12:5015580 Lac13g0995 Lac-Chr13:8319658 7.60E-74 transposed
Lac13g0995 Lac-Chr13:8319658 Lac7g2733 Lac-Chr7:46407114 4.30E-133 wgd
Lac13g0995 Lac-Chr13:8319658 Lac8g2527 Lac-Chr8:43068512 1.80E-126 wgd
Lac13g0995 Lac-Chr13:8319658 Lac9g2465 Lac-Chr9:43539314 2.60E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0995 - - - 0.0