Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1006 ATGACAGGGCTTAACTCTTCTTCTTCTTCATCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTCTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACACCTCCCCATGCACATCCGAAGCCACGCTGCGATTACCGTTGCCTACGAAGCCCTCGAGCGCATGCGAGATCCCACCTATGGCTGTGTCGCGCATATATTCGCCTTGCAACAAGAGATCGTAAGCTTGCAAGAGGAGATAGATATTCTGGGGAGTCAAATAGCCAACTTCGCCGCTAGTAGCGGCGGGCTTGCGGGGGTCGAGAATCCATTTATAGAGCTTCAAGCCTCACAGCAATTGAATGATTTTGTGATGAACACAAATGATTATCAAAATGAGCTGCTAGTTTCTCAGCTACCCCACCAAACTTTTGATCATGCCCAAACTGATGATCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGAAGGGTTTTTTGGGTGCAACCCAAATAATGTTGTGGAGAGATCAGCCTTTGATGTTTCACTTGAGGAGAATTTTGCTTGTTATCCATGGTAG 642 44.55 MTGLNSSSSSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDILGSQIANFAASSGGLAGVENPFIELQASQQLNDFVMNTNDYQNELLVSQLPHQTFDHAQTDDQMISPLFCLGEEEGFFGCNPNNVVERSAFDVSLEENFACYPW 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8504206 8505177 + Lag0040802.1 Lac13g1006 592162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1006 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 135 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Lac13g1006 213 Coils Coil 93 113 - -
Lac13g1006 213 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Lac13g1006 213 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1883 Lac-Chr12:35332115 Lac13g1006 Lac-Chr13:8504206 2.70E-36 dispersed
Lac13g1006 Lac-Chr13:8504206 Lac7g0319 Lac-Chr7:2464212 2.50E-33 dispersed
Lac10g1284 Lac-Chr10:11430852 Lac13g1006 Lac-Chr13:8504206 4.30E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23192 PF03195 LOB 9.70E-33 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1006 K13945 - csv:101204875 325.094