Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1008 ATGGCAAATCGATGGTGGGCTGAAAATATACCCACCACTACAGATAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCCGCCGATGAAGATAACAACTCCGGCAGCCAAGAGAGAGCTGAACCAGGCACCAGCTCCAGCGCGCGTCGCCCACGTGGCCGGCCTCCGGGATCCAAGAACAAGCCGAAACCGCCGGTGGTGGTCACAAAGGAGAGCCCCGATGCCCTCCGGAGCCACGTTTTGGAGATCGGCAGCGGCAGCGACATCGTCGAAAGCATCTCAAACTTCGCCCAACGCCGCCAGCGAGGGGTTTCAGTCCTCAGTGGAAATGGGGTCGTCGCCAATGTCACTCTAAGGCATCCGGCTGCCCCCGGTGGCGTTATTACGCTACAGGGACGATTCGATATATTGTCGCTCTCTGGTGCTTTTCTGCCTGCCCCAGCTCCGCCGGGGGCTACCGGGTTGACAGTTTACTTGGCTGGCGGGCAGGGGCAGGTTGTTGGTGGCATTGTCGTCGGTGCACTCATTGCAACCGGTCCGGTTATTGTCATTGCTGCTACTTTCACCAATGCTACATTCGAGCGGCTGCCGCTCGAGGACGAGGAGGCAGCCACCGGAGACAAGTCTGGAAATAGCCAGAACAATTCAACTTCTCAGAGCATGGGAGAGCAGCAGCAGCAGCAGCAACAACAGCCTTCAATGGGAGTTTACAATATTGCTCAAAATTTGGTGCCAAACGGTCAGGTTTCTTCACATGATGTGTTTTGGAGTCCTCCTCGAGCCCCACCTCCATTTTAA 813 55.84 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEDNNSGSQERAEPGTSSSARRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVIAATFTNATFERLPLEDEEAATGDKSGNSQNNSTSQSMGEQQQQQQQQPSMGVYNIAQNLVPNGQVSSHDVFWSPPRAPPPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8513065 8513877 - Lag0040804.1 Lac13g1008 592164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1008 270 MobiDBLite consensus disorder prediction 212 243 - -
Lac13g1008 270 CDD DUF296 82 165 IPR005175 -
Lac13g1008 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 267 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac13g1008 270 MobiDBLite consensus disorder prediction 1 49 - -
Lac13g1008 270 MobiDBLite consensus disorder prediction 205 243 - -
Lac13g1008 270 PIRSF ESCAROLA 7 268 IPR014476 GO:0003680(InterPro)
Lac13g1008 270 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Lac13g1008 270 Gene3D - 81 211 - -
Lac13g1008 270 ProSiteProfiles PPC domain profile profile. 78 218 IPR005175 -
Lac13g1008 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Lac13g1008 270 MobiDBLite consensus disorder prediction 1 78 - -
Lac13g1008 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1008 Lac-Chr13:8513065 Lac6g2829 Lac-Chr6:45927148 1.30E-66 dispersed
Lac7g0635 Lac-Chr7:5083327 Lac13g1008 Lac-Chr13:8513065 1.50E-65 transposed
Lac8g2937 Lac-Chr8:46379978 Lac13g1008 Lac-Chr13:8513065 7.30E-57 transposed
Lac13g1008 Lac-Chr13:8513065 Lac5g0266 Lac-Chr5:2586880 4.90E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1008 - - - 0.0