Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1097 ATGGAAGGGAAGGAAGAAGACGTTAGGCTCGGAGCCAACAAGTTCAACGAGAGGCAGCCCATTGGGACGGCGGCACAGAGCCAGGACGACGCCAAGGACTACAAGGAGCCACCGCCGGCGCCGCTCTTCGAGCCGGAGGAGCTCACTTCCTGGTCCTTTTACAGAGCCGGAATCGCCGAGTTCTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGCAAGACCGTCGGAATTCAGGGCATTGCTTGGGCGTTCGGTGGCATGATCTTCGCCCTCGTCTACTGCACAGCCGGCATCTCCGGAGGACACATAAACCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACCAGGGCAATTTTCTACATAGTGATGCAGTGTCTCGGAGCCATTTGCGGCGCCGGCGTCGTCAAGGGCTTCCAACCCAAGCCCTACGACAGGCTCAACGGCGGAGCTAACATGGTCAGCCCCGGCTACACCAAAGGCGACGGCCTCGGCGCTGAGATCGTCGGGACCTTTATCCTTGTTTACACCGTCTTCTCTGCCACCGACGCCAAACGCAGCGCCAGAGACTCACACGTTCCAATCTTGGCTCCGTTGCCAATTGGGTTCGCAGTGTTCTTAGTTCACTTAGCCACGATCCCGATCACCGGCACCGGCATCAACCCAGCTCGGAGTTTGGGCGCCGCCATTATCTACAACCACGACAAAGCCTGGGATGACCACTGGATTTTCTGGGTCGGACCGTTCATCGGCGCCGCGCTGGCAGCTCTGTACCACCAAGTCGTAATCAGAGCCATCCCCTTCAAGTCCAAGTGA 879 58.36 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLNGGANMVSPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNHDKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9352405 9353547 - Lag0040893.1 Lac13g1097 592253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1097 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Lac13g1097 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 CDD MIP 55 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Lac13g1097 292 FunFam Probable aquaporin PIP1-2 40 292 - -
Lac13g1097 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Lac13g1097 292 MobiDBLite consensus disorder prediction 1 39 - -
Lac13g1097 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g1097 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lac13g1097 292 NCBIfam MIP family channel protein 59 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1097 Lac-Chr13:9352405 Lac9g2580 Lac-Chr9:44358020 2.10E-115 dispersed
Lac11g2078 Lac-Chr11:36652190 Lac13g1097 Lac-Chr13:9352405 1.40E-140 transposed
Lac9g1776 Lac-Chr9:37492335 Lac13g1097 Lac-Chr13:9352405 1.10E-14 transposed
Lac10g3194 Lac-Chr10:46090835 Lac13g1097 Lac-Chr13:9352405 1.10E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1097 K09872 - csv:101214512 570.081