Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g1107 | ATGGCTTTCCTCTTCTTCCTCCTCCTCCTCTTCTCCTCTCTCTTCCTCTTCCTCCGCCCCGCCAGATTCCGGCGACTCCGCCTCCCGCCGGGAACCCTCGGCCTCCCCCTCATCGGCGAGACCCTCCAGCTCATCTCCGCCTACAAGACCGAGAACCCCGAGCCCTTCATCGACGACCGTGTCCGCCGGTTCGGACCGGTCTTTACCACTCACTTGTTCGGCGAGCCGACGGTTTTCTCCGCCGATTCGGAGACCAACCGGTTCATTCTTCAGAATGAGGAGAAGCTTTTCGAGTGTAGCTACCCCGGTTCGATCTCCAACCTTCTTGGGAAGCATTCTTTGTTGCTCATGAAAGGGAGTTTGCATAAGAGAATGCATTCCTTGACTATGAGCTTTGCCAATTCGTCCATTATTCGCGATCATCTTTTGGTCGATGTGGACCGGTTGATTCGGCTCAATTTGGAGTCTTGGACCGGCCGGATCTTCCTCATGGAGGAGGCCAAAAAGATAACATTTGAATTAGCAGTGAAGCAATTGATGAGCTTTGATCGGTGTCAATGGACTCAAAATCTCATGAAACAATATCTTCTTGTCATTGAAGGTTTTTTCACCGTCCCTCTCCCTCTCTTCTCCTCCACTTACCGTCGAGCCATTCAGGCGCGGAGGGAAGTGGCGGAGCAATTGGGGACGGTGGTGAGACAGCGAAGGAAAGAGAGCGAGGACGGAGAGAGGAAGAAGGACATGCTCGGCGCATTGCTCGCCGGAGACGACGCCCTCTCCGACGAGCAAATAGTGGATTTCTTATTGGCTCTGTTGGTGGCGGGATATGAAACGACGTCAACCACCATGACACTCGCCGTTAAGTTTCTGACGGAGACGCCGCTGGCTTTGGCCCAATTACAGGAAGAGCACGAGCAAATCAAAGCAAGGAAGAAGGAATCAGACCAACATCTCCAATGGAATGATTACAAGTCCATGCCTTTCACCCAATGTGTTGTGAATGAAACATTAAGAGTTGCCAACATAATCAGTGGGATTTTTAGGAGGGCAATGAAAGATGTCAATATCAAAGGTTATACAATTCCAAAGGGATGGAAGGTTTTTGCATCATTTCGTGCAGTACATTTGGACCATGATCATTTCAAAGATGCTCGCTCTTTTAATCCATGGAGATGGCAACAGAGTGGCTCGGGGTCGACGACGGTAAATGCATTTACACCGTTCGGAGGAGGTCCGAGGCTATGCCCTGGGTACGAGCTTGCCAGAGTAGAACTCTCTGTTTTCCTTCACCATCTTGTCACCCAATTCAGTTGGGTTCCTGCAGAAGAGGATAAGTTGTTATTTTTCCCTACAACAAGAACACAGAAGCGCTATCCTATCTATGTGACGCGTAAGAACGAAACTAGACAATGTAAAGACAGTCATCCATGA | 1431 | 49.97 | MAFLFFLLLLFSSLFLFLRPARFRRLRLPPGTLGLPLIGETLQLISAYKTENPEPFIDDRVRRFGPVFTTHLFGEPTVFSADSETNRFILQNEEKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIRDHLLVDVDRLIRLNLESWTGRIFLMEEAKKITFELAVKQLMSFDRCQWTQNLMKQYLLVIEGFFTVPLPLFSSTYRRAIQARREVAEQLGTVVRQRRKESEDGERKKDMLGALLAGDDALSDEQIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQEEHEQIKARKKESDQHLQWNDYKSMPFTQCVVNETLRVANIISGIFRRAMKDVNIKGYTIPKGWKVFASFRAVHLDHDHFKDARSFNPWRWQQSGSGSTTVNAFTPFGGGPRLCPGYELARVELSVFLHHLVTQFSWVPAEEDKLLFFPTTRTQKRYPIYVTRKNETRQCKDSHP | 476 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 9552769 | 9558237 | + | Lag0040903.1 | Lac13g1107 | 592263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g1107 | 476 | PRINTS | P450 superfamily signature | 406 | 415 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | P450 superfamily signature | 331 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | P450 superfamily signature | 415 | 426 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | P450 superfamily signature | 274 | 291 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | FunFam | Cytochrome P450 90A1 | 18 | 465 | - | - | |
| Lac13g1107 | 476 | SUPERFAMILY | Cytochrome P450 | 22 | 464 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | Coils | Coil | 297 | 317 | - | - | |
| Lac13g1107 | 476 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 408 | 417 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac13g1107 | 476 | Gene3D | Cytochrome P450 | 18 | 465 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | Pfam | Cytochrome P450 | 202 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | CDD | CYP90-like | 60 | 464 | - | - | |
| Lac13g1107 | 476 | PRINTS | E-class P450 group I signature | 415 | 438 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | E-class P450 group I signature | 283 | 309 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | E-class P450 group I signature | 330 | 348 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | E-class P450 group I signature | 405 | 415 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | E-class P450 group I signature | 263 | 280 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PRINTS | E-class P450 group I signature | 370 | 394 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1107 | 476 | PANTHER | CYTOCHROME P450 26 | 27 | 440 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g1121 | Lac-Chr11:13888203 | Lac13g1107 | Lac-Chr13:9552769 | 1.80E-38 | dispersed | |
| Lac13g1107 | Lac-Chr13:9552769 | Lac1g2963 | Lac-Chr1:50416042 | 9.30E-89 | dispersed | |
| Lac13g1107 | Lac-Chr13:9552769 | Lac4g2977 | Lac-Chr4:48035012 | 2.50E-102 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g1107 | K09588 | - | csv:101216594 | 821.617 |