Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1113 ATGACGAAATTACCCTCTCCGACCGTCGCCACCGCCGTCCTCACCTTCATCGTCGTCGTTTCCCCTCTCTTCCCGGCGACCCAAGCTCTCGGCTCTGCCTCCACCCTCGCCGTCAGCTACGGCTCTGCTACGGTCTGCGGCATCGTCGCCGAGCAGCCGACGCAAAGGATTCTGTGCTTCCGTAACGGTCAAACCGTTTTTATCGAGCCAAATATCTCCTTCTCCGCCGTCTCCGGCGGCCGGAATACCTTCTGCGGCATAAGGGCCGGCGGCTACGTCCTCCTCTGCTGGGACTTCGACCCGAACACTGCCGCGTTTTCCCGGAGAAGACTCTACTACGACACCACCGTCCTTCTCGAGAATCTCGCCGTCGGTGACGACCAAATCTGCGCCACGGCGGTCGGCGCCGGCAATGTAACTTGCTGGCGACAAGGTAACAACGCGCCAGTAGGATTTTCTTCTCTTCAATTCGATTCTATCTCTTCTGGGTTTGGATTTTCTTGCGGAATTTTGAAAGGGAATCAATCCGTTCGATGTTGGGGCCGAAATTCGTCGATTGCGACCCTGATCGAAAATGGGTTTCGAAATATTTCAATGTCGACCATCGTCGCCGGTGGGTTTCATGCTTGTGGATTGAATTTCTCTGGTGGGTTGGTCTGTAGAGGGAACAACGATTTTGGGCAGTTGGATTTTCCTTCAAATTCATCGATGGGGTTCTCTGAATTGGCCCTCGGCGAACGCCATAGCTGTGGGATTTTGCTGTCGAATCGATCGGTGGTTTGTTGGGGCGGTGTGGGATTCTCTGTTGATTCGATTCGAGAGACTTCTTTTGAGTTAATTTCTTCGGGATCGGATTTCGTTTGTGGGTTAACGACGAGTAATTTCTCTGTTCTTTGTTGGGGGCCTGGTTGGCCGAATGATTCTTTGGGTCTTTTTTCACTTTCTCTTCCTAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTAGCGATTGTGGAGTTTATCCTCTGTCTCAAACGCTCTGTTCTGGTTCTGGGAATGTCTGTACTCGCTGTTTGGTTACTGTTTCAACCTCGCCGTCGCCTCCTCTGCCTCCTCCGCCGTCGCCACCATCAATGGTGCCGACCCCATCACCTCCTCCGGCGGCCTTGACAAAGGGTTTGTTGGCTTTTGCTATTGTGGGCTCAGTTGGGGCCTTTGCTGGGATTTGTACTATTGTTTACTGTCTGTGGACTGGTGGTGTTTGTTTTGGGAACAAGAAGATTCACAACTCTGTTCAGCCCACCATTACTCGAGCTGCCAGCTCGAACGGCGGAACGACAACATCAAACACGAACAACAGCCCGCCATCACGGTCCTCGACGATTCGGCGACAGGGGTCTCGGATAATGCGGAGGCAGAGGAGTGGTACCTCGTCGAAACACGCAGATAGAGCAGAAGAATTCACTGTGGCCGAGCTTGCTTTGGCCACCAATGACTTCTCCCATGAGAACAAGATCGGCGAGGGGAGCTTCGGCGTCGTGTACCGGGGGAAACTGTCCGATGGGCGGGAAGTTGCGATCAAGAGAGGCGAAACGGGGCCGAAAACGAAGAAGTTTCAGGAGAAGGAGAGTGCTTTTGATTCAGAATTGGCATTCTTGTCTAGGCTTCATCACAAGCATTTGGTGAGGCTTGTTGGGTATTGTGAGGAGAAAGATGAGAGGCTGTTGGTTTATGAGTATATGAAAAATGGTGCACTTTACAATCATCTTCATGACAAGAACAACACTGAAAAAGGCAGCAATGTTATAAACTCTTGGAAAATGAGGATCAAAATTGCTTTAGATGCAGCCAGAGGGATTGAATATCTTCACAACTATGCAGTCCCTCCCATAATCCATAGAGATATCAAATCGTCCAACATTCTCCTCGACTCGAATTGGACGGCGAGAGTGTCTGATTTCGGGTTGTCGTTGATGAGTCCAGGGTCAGATCGTGACTTCCGACCGACCAAGGCAGCTGGGACTGTTGGTTACATCGATCCTGAGTACTATGGACTGAATGTTTTGACTGCTAAGAGCGATGTGTATGGGCTTGGGGTGGTGTTGTTGGAGCTCTTGACAGGGAGGAGAGCTATATTTAAGGATGATGAACAGGGAGGGACACCGGTGAGCGTGGTCGATTTTGCGGTGCCTGTGATCATGGTCGGAGAACTGGTGAAGATTTTGGATCAAAGAGTTGGGCCACCGCAGATGAACGAAGCGGAGGCGGTGGAGCTGGTGGCTTACACGGCGATGCACTGTGTGCATTTGGAAGGGAAAGATCGACCGACGATGACCGACATTGTCGCTAATTTGGAGCGAGCTTTGAATCTCTGTGATGATAGCCATGGCAGCATCTCTAGTGGTGGAATTTCCATTGTTTCAGAGTGA 2412 51.12 MTKLPSPTVATAVLTFIVVVSPLFPATQALGSASTLAVSYGSATVCGIVAEQPTQRILCFRNGQTVFIEPNISFSAVSGGRNTFCGIRAGGYVLLCWDFDPNTAAFSRRRLYYDTTVLLENLAVGDDQICATAVGAGNVTCWRQGNNAPVGFSSLQFDSISSGFGFSCGILKGNQSVRCWGRNSSIATLIENGFRNISMSTIVAGGFHACGLNFSGGLVCRGNNDFGQLDFPSNSSMGFSELALGERHSCGILLSNRSVVCWGGVGFSVDSIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWPNDSLGLFSLSLPKILPGPCVQSSCSDCGVYPLSQTLCSGSGNVCTRCLVTVSTSPSPPLPPPPSPPSMVPTPSPPPAALTKGLLAFAIVGSVGAFAGICTIVYCLWTGGVCFGNKKIHNSVQPTITRAASSNGGTTTSNTNNSPPSRSSTIRRQGSRIMRRQRSGTSSKHADRAEEFTVAELALATNDFSHENKIGEGSFGVVYRGKLSDGREVAIKRGETGPKTKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHLHDKNNTEKGSNVINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWTARVSDFGLSLMSPGSDRDFRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGRRAIFKDDEQGGTPVSVVDFAVPVIMVGELVKILDQRVGPPQMNEAEAVELVAYTAMHCVHLEGKDRPTMTDIVANLERALNLCDDSHGSISSGGISIVSE 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9659704 9662115 - Lag0040909.1 Lac13g1113 592269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1113 803 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524(InterPro)
Lac13g1113 803 SMART serkin_6 494 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1113 803 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 33 793 IPR044815 GO:0004674(InterPro)
Lac13g1113 803 Pfam Regulator of chromosome condensation (RCC1) repeat 202 228 - -
Lac13g1113 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g1113 803 Pfam Protein kinase domain 495 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1113 803 SUPERFAMILY RCC1/BLIP-II 71 304 IPR009091 -
Lac13g1113 803 Gene3D Transferase(Phosphotransferase) domain 1 575 792 - -
Lac13g1113 803 MobiDBLite consensus disorder prediction 431 477 - -
Lac13g1113 803 FunFam serine/threonine-protein kinase-like protein CCR1 463 574 - -
Lac13g1113 803 MobiDBLite consensus disorder prediction 359 379 - -
Lac13g1113 803 FunFam Serine/threonine-protein kinase-like protein CCR4 575 795 - -
Lac13g1113 803 Gene3D Phosphorylase Kinase; domain 1 455 574 - -
Lac13g1113 803 SUPERFAMILY Protein kinase-like (PK-like) 475 779 IPR011009 -
Lac13g1113 803 Gene3D - 119 310 IPR009091 -
Lac13g1113 803 ProSiteProfiles Protein kinase domain profile. 494 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1113 803 MobiDBLite consensus disorder prediction 431 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1411 Lac-Chr11:23263974 Lac13g1113 Lac-Chr13:9659704 4.70E-09 dispersed
Lac13g1113 Lac-Chr13:9659704 Lac7g2833 Lac-Chr7:47466282 6.60E-164 dispersed
Lac6g0982 Lac-Chr6:8867511 Lac13g1113 Lac-Chr13:9659704 9.30E-53 dispersed
Lac13g1113 Lac-Chr13:9659704 Lac2g2460 Lac-Chr2:35879281 2.80E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85863 PF00069 Pkinase 1.30E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1113 - - - 0.0