Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g1118 | ATGAATCAAAGCCAAAACCAAAAGCCAAAGTCACCTGACAAACTCTTTGCGTTTTTGACGTGTCCGTACAAAAGGTTCAAAGTTTATCGATGCTGGTCACTGGGCAGTGATCACTCCGATCTCTTCGACTTCTGCAAATTTCCCTTCAATTCACTCAATCAATCAATGGCTTCAATCTCTGCCAGCCCTCGCACCGTCGAAGACATATTCAAGGATTACAGCGCTCGACGCACTGGCCTTGTGCGAGCCCTCACTTACGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTATACGGACATCCCAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCTGCCTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTTGGTGCTCGACTCAACCGCAATGAGCGTTGCGAAAATGGGAAAGATCATATTCTTTTCTCGTCATTGTGA | 558 | 48.21 | MNQSQNQKPKSPDKLFAFLTCPYKRFKVYRCWSLGSDHSDLFDFCKFPFNSLNQSMASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGARLNRNERCENGKDHILFSSL | 185 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 9718867 | 9720100 | + | Lag0040914.1 | Lac13g1118 | 592274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g1118 | 185 | Pfam | Alfin | 65 | 173 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
| Lac13g1118 | 185 | PANTHER | CPG BINDING PROTEIN | 62 | 172 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g1118 | Lac-Chr13:9718867 | Lac6g3087 | Lac-Chr6:48395336 | 1.70E-46 | dispersed | |
| Lac10g3221 | Lac-Chr10:46329410 | Lac13g1118 | Lac-Chr13:9718867 | 7.00E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g1118 | K26274 | - | csv:101211934 | 237.269 |