Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1121 ATGATTAATGATCTACCAACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACTAAGAGGTTACTAGATGGGTCGATTAGAAACAGCAATACGAAGCTACTCGATGAGAGTTATGGAGATGACGAAGATGAGCATGGTGATACTCTCTGTGGGAGCTGCGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCTAAGGCAGAAAATATCAAGCAGTACAAATGCCCCAATTGCAGCATGAAGAGAGGAAGACCGTAG 360 43.61 MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGRP 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9739733 9740223 + Lag0040917.1 Lac13g1121 592277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1121 119 ProSiteProfiles Zinc finger PHD-type profile. 63 115 IPR019787 -
Lac13g1121 119 FunFam PHD finger alfin-like protein 58 114 - -
Lac13g1121 119 CDD PHD_AL_plant 65 115 IPR044104 -
Lac13g1121 119 MobiDBLite consensus disorder prediction 16 38 - -
Lac13g1121 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 113 IPR013083 -
Lac13g1121 119 ProSitePatterns Zinc finger PHD-type signature. 66 112 IPR019786 -
Lac13g1121 119 SMART PHD_3 65 113 IPR001965 -
Lac13g1121 119 Pfam PHD-finger 66 112 IPR019787 -
Lac13g1121 119 SUPERFAMILY FYVE/PHD zinc finger 54 117 IPR011011 -
Lac13g1121 119 PANTHER CPG BINDING PROTEIN 1 118 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1121 Lac-Chr13:9739733 Lac4g3002 Lac-Chr4:48280054 2.50E-35 dispersed
Lac13g1121 Lac-Chr13:9739733 Lac10g3221 Lac-Chr10:46329410 4.60E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23195 PF00628 PHD 2.10E-11 CL0390 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1121 K26274 - csv:101211934 240.736