Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1121 ATGATTAATGATCTACCAACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACTAAGAGGTTACTAGATGGGTCGATTAGAAACAGCAATACGAAGCTACTCGATGAGAGTTATGGAGATGACGAAGATGAGCATGGTGATACTCTCTGTGGGAGCTGCGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCTAAGGCAGAAAATATCAAGCAGTACAAATGCCCCAATTGCAGCATGAAGAGAGGAAGACCGTAG 360 43.61 MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGRP 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9739733 9740223 + Lag0040917.1 Lac13g1121 592277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1121 119 ProSiteProfiles Zinc finger PHD-type profile. 63 115 IPR019787 -
Lac13g1121 119 FunFam PHD finger alfin-like protein 58 114 - -
Lac13g1121 119 CDD PHD_AL_plant 65 115 IPR044104 -
Lac13g1121 119 MobiDBLite consensus disorder prediction 16 38 - -
Lac13g1121 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 113 IPR013083 -
Lac13g1121 119 ProSitePatterns Zinc finger PHD-type signature. 66 112 IPR019786 -
Lac13g1121 119 SMART PHD_3 65 113 IPR001965 -
Lac13g1121 119 Pfam PHD-finger 66 112 IPR019787 -
Lac13g1121 119 SUPERFAMILY FYVE/PHD zinc finger 54 117 IPR011011 -
Lac13g1121 119 PANTHER CPG BINDING PROTEIN 1 118 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1121 K26274 - - csv:101211934 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1121 Lac-Chr13:9739733 Lac4g3002 Lac-Chr4:48280054 2.50E-35 dispersed
Lac13g1121 Lac-Chr13:9739733 Lac10g3221 Lac-Chr10:46329410 4.60E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g1806 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.4 1.4e-112 403.3
Lac6g3087 . 9 248 Alfin-like Transcription Factor Family AT1G14510 70.1 2.1e-95 346.3
Lac4g3002 . 157 404 Alfin-like Transcription Factor Family AT1G14510 65.1 8.1e-92 334.3
Lac6g0152 . 1 272 Alfin-like Transcription Factor Family AT1G14510 63.6 8.1e-92 334.3
Lac10g3221 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.8e-78 290.0
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT1G14510 71.4 1.1e-43 174.5
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT5G26210 75.6 6.0e-111 397.9
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT5G26210 67.8 1.2e-103 373.6
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT5G26210 65.7 6.5e-97 351.3
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 7.4e-93 337.8
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.2e-80 295.4
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G26210 75.2 5.8e-45 178.7
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.9 2.9e-102 369.0
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT3G42790 64.1 3.5e-95 345.5
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT3G42790 63.7 1.0e-94 344.0
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.9e-89 325.9
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 6.0e-79 291.6
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT3G42790 74.3 4.0e-43 172.6
Lac10g3221 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.5 2.9e-107 385.6
Lac6g3087 . 8 250 Alfin-like Transcription Factor Family AT5G05610 64.8 2.9e-91 332.4
Lac4g3002 . 166 406 Alfin-like Transcription Factor Family AT5G05610 63.6 1.2e-89 327.0
Lac6g0152 . 8 274 Alfin-like Transcription Factor Family AT5G05610 60.7 1.2e-87 320.5
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G05610 62.5 1.3e-83 307.0
Lac13g1118 . 56 172 Alfin-like Transcription Factor Family AT5G05610 80.3 1.2e-52 204.1
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT5G05610 71.4 7.6e-47 184.9
Lac10g3221 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 1.1e-87 320.5
Lac6g0152 . 66 274 Alfin-like Transcription Factor Family AT3G11200 65.6 2.9e-75 279.3
Lac6g3087 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.6 3.2e-74 275.8
Lac4g3002 . 200 406 Alfin-like Transcription Factor Family AT3G11200 64.5 1.2e-73 273.9
Lac5g1806 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.4 1.2e-68 257.3
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT3G11200 69.4 6.9e-45 178.3
Lac13g1118 . 98 172 Alfin-like Transcription Factor Family AT3G11200 92.0 1.8e-37 153.7
Lac5g1806 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.4e-77 285.4
Lac6g3087 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 1.0e-65 247.7
Lac4g3002 . 157 314 Alfin-like Transcription Factor Family AT2G02470 74.1 6.1e-63 238.4
Lac6g0152 . 1 180 Alfin-like Transcription Factor Family AT2G02470 68.3 7.5e-61 231.5
Lac10g3221 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.2e-53 207.6
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT2G02470 72.3 2.4e-43 173.3
Lac6g3087 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 3.2e-72 268.9
Lac4g3002 . 157 318 Alfin-like Transcription Factor Family AT5G20510 77.1 9.5e-69 257.3
Lac6g0152 . 1 189 Alfin-like Transcription Factor Family AT5G20510 67.4 2.8e-68 255.8
Lac5g1806 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.4e-64 242.7
Lac10g3221 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-51 200.3
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G20510 73.3 1.8e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23195 PF00628 PHD 2.10E-11 CL0390 Lac TF