Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1129 ATGAGTGGAAGACCGAGTCGGATTATATTCTGTCACCCACCCAAACCACTCAACACCACAACACTCTCGACGCGTCAACGAATCTCTTTGCCTGTGGCTGTGGTGGAGAGCTCTGCAGTTAACAAAGCCCAAACAAAAAAAAAACATATTGCTTTCCATCTCATCTCCAATTTCATCCTCATTTCGCATTTCATTTGGGTTTCATTTGGATTCCTTCTTGCGACGAAGCAACCGCGATTTGGGTCGAATTTGGATAGCGAAAGCGGGGCCTTTTCATTTCACTCTGCTTTGACTTTGACTGCTGAACCCGCTCCGAAGAAAACACCTCAAACTCTCCCTCCAATCGAGGACTTCTCGATTTCTTCCTTTTTTTCCCCTCTTGCCGCTGAGTATTTTCGACTGCTGGAGCTGTTTCTTCGTTCAATTTGCTTCCAGGTAGCGAATCGATCTGCTTTTCTGGAGTTGGATATGTGCAGTGGCTCAAAGAAAAAAGTTGCTTCCTCGAATTCCGCCATGGAAGCCAAGTCTCAGAAGCTTAACGATGGGGCTTTTTTCTCTGCGAGTTCAATCTTGCTTGAACTGTCGGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGGTTTGGATGTTGATGAACCAAGCTGCTGGTATGGGAGAGGAATTGGGTCTAAGAAGATGGGTTTTGAAAAAAGAACTCCACTGATGATTGCTGCCATGTTTGGGAGCTCCAAGGTTGTCAAGTACTTAATTGACTCAGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGCCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTGGCTCTTCCCTTGAGGCCATCAAGCTCTTGCTCGACGGATCTGCTGATGTCGATTGTGTCGATGCCAACGGGAGAAAACCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTGTAATTCAGGAAGAAAGGCTATGGAGATGTTATTGAGAGGAGATGGTATGGCTGGGGAAGGTGATCTGAGCCTTTACCTTGAAGAAGACCAACAGAAGATCACAGCTTCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCGGTTGATGTATCGCTGCCCGACATCAACAGCGGGATATACGGTACTGATGATTTCAGGATGTATACCTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGCCCGTTCGTTCATCCTGGCGAGAACGCTAGGCGCAGAGACCCCAGGAAGTACCCTTATAGTTGCGTACCGTGCCCCGAGTTCCGCAAGGGGGCTTGTCCAAAGGGAGATTCCTGCGAGTATGCACATGGTGTCTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCAGGCTCTGCAAGGATGAGACTGGCTGCACAAGGAAGGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTATATGCTTCAACAGGCTCAGGCATGCCTTCACCGAGGTCTCTTTCAAGCAGTGCAGCAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCGTCATCGTTGTCGTTGCCAACTACATCGACGCCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTAAGAATGGAAACCTGTGGCAAAACAAGATTAACCTTACCCCTCCTGCTCTGCAGCTCCCTGGTAGTCGGTTAAAGACCACCTTGAGTGCAAGAGATTTGGATCTAGAGATGGAATTGCTCGGGTTGGAAAAGAACGCAAGCCAATTACAACATCAACAGCAGTTGATCGACGAGATAGCCCGACTCTCCTCTCCGTCTTACTGGAGCACAGATGTAAGCAGGAGTGCAGAGTTGAAGCCATCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGCACCTCGCTAAAAACACCAATCTCAGCTCAGGTTCAATCTCCCACCGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGTGCAAGTTACCCGGCTAACTTATCATCCTCACCTGTAAAGAAACCCTCCTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCTGCCTTCGCAAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGCCTCGTCTTCCCGGGTTTACCACAGCTGCAAACTCTGCAGCTACAATGTCTTCCCATCTCTCAGATTGGAACTCACCTGATGGCAAACTAGACTGGGGAATGAACGGCAATGATCTCAACAAACTCAAGAAATCTGCATCATTTGGGATCCGAAACAACAGCATAAAAGCTCCCACCTTTGCGCCTTCAGCAGAGGAACCCGATGTCTCTTGGGTTAACTCCTTGGTTAAAGATGTTCCCACCGACAGCTTCGGGCCGTTCGGAGTCGAGAAGCGGCAATACAACCTCAAAAGAGAAATCAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2529 48.75 MSGRPSRIIFCHPPKPLNTTTLSTRQRISLPVAVVESSAVNKAQTKKKHIAFHLISNFILISHFIWVSFGFLLATKQPRFGSNLDSESGAFSFHSALTLTAEPAPKKTPQTLPPIEDFSISSFFSPLAAEYFRLLELFLRSICFQVANRSAFLELDMCSGSKKKVASSNSAMEAKSQKLNDGAFFSASSILLELSASDDVEGFKREVEEKGLDVDEPSCWYGRGIGSKKMGFEKRTPLMIAAMFGSSKVVKYLIDSGKVDVNRACGSDMATALHCATAGGSGSSLEAIKLLLDGSADVDCVDANGRKPVDLIVSACRMVCNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKITASQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKTTLSARDLDLEMELLGLEKNASQLQHQQQLIDEIARLSSPSYWSTDVSRSAELKPSNLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSPTGLQMRQNMNQLRASYPANLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGFTTAANSAATMSSHLSDWNSPDGKLDWGMNGNDLNKLKKSASFGIRNNSIKAPTFAPSAEEPDVSWVNSLVKDVPTDSFGPFGVEKRQYNLKREINEMLPSWMEQQLYAEQEQIVA 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9920605 9923394 + Lag0040925.1 Lac13g1129 592285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1129 842 SMART ANK_2a 233 263 IPR002110 GO:0005515(InterPro)
Lac13g1129 842 SMART ANK_2a 268 300 IPR002110 GO:0005515(InterPro)
Lac13g1129 842 SMART c3hfinal6 426 452 IPR000571 GO:0046872(InterPro)
Lac13g1129 842 SMART c3hfinal6 461 484 IPR000571 GO:0046872(InterPro)
Lac13g1129 842 Gene3D - 157 319 IPR036770 -
Lac13g1129 842 ProSiteProfiles Ankyrin repeat profile. 233 257 IPR002110 GO:0005515(InterPro)
Lac13g1129 842 SUPERFAMILY Ankyrin repeat 195 310 IPR036770 -
Lac13g1129 842 ProSiteProfiles Zinc finger C3H1-type profile. 426 453 IPR000571 GO:0046872(InterPro)
Lac13g1129 842 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 430 451 IPR000571 GO:0046872(InterPro)
Lac13g1129 842 FunFam Zinc finger CCCH domain-containing protein 66 384 452 - -
Lac13g1129 842 MobiDBLite consensus disorder prediction 491 541 - -
Lac13g1129 842 Gene3D - 427 489 - -
Lac13g1129 842 ProSiteProfiles Ankyrin repeat profile. 268 303 IPR002110 GO:0005515(InterPro)
Lac13g1129 842 PANTHER UNKEMPT FAMILY MEMBER 227 799 IPR045234 -
Lac13g1129 842 Pfam Ankyrin repeats (3 copies) 233 300 IPR002110 GO:0005515(InterPro)
Lac13g1129 842 ProSiteProfiles Ankyrin repeat region circular profile. 233 257 - -
Lac13g1129 842 MobiDBLite consensus disorder prediction 496 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1129 Lac-Chr13:9920605 Lac9g2386 Lac-Chr9:43013698 1.60E-216 dispersed
Lac13g1129 Lac-Chr13:9920605 Lac3g0988 Lac-Chr3:8046319 2.40E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23196 PF12796 Ank_2 6.10E-08 CL0465 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1129 - - - 0.0