Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1146 ATGTGCGCAGTTGCAGTGCCGAAGGCGACGGCGACCACTCCTTTATTTTCATCTCCAAAGATCGCTTCACTAATCTACAAGTCGTCTTTGAATTATTGTTCTTCTTCTTCTCCTTCGTCGCCGAGATCCGTGTCGAGTCCAAGGAAGCTTCATGTTTCTGCATCTTCGCCATCGCAGCCGCAACTTCCGCCCTCTGTTTCGTCGTTGGCTATTGATACGGTTTTGAAGAGGAAGAGGCCGGCCAGAATCGACGTTCCGCCGTCGTCCATTGGTTTTGGATTTGGATTAGAGAAACAACCGGAGGTGATGGAGGAGGAAGGGGAAGGTTATTCGGTTTTTTGTAAAAGAGGAAGAAGACGCAGCGCCATTGAGGATCGATTCTCGGCCACCGTCCGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTTGGACGGGCACGGCGGAGCAGAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCAAGAACGTGATCGATCAAGTAACAAGAAGAACCGATTCGGAACTCGAGGAAGCAATCAAAGACGGCTATCTCGCCACCGATCGGGAAGTATTGGAGGAAGGAGTCGGCGGCGGCGGCGCCTGTTGCGTCTCCGCATTGATTCGGAACGGAAATCTCGCAGTCTCAAACGTCGGCGATTGCCGCGCTGTGTTGAGCCGAAGGGGAAAAGCCGAAGCCCTAACCTCCGATCACCGCCCGTCGAGAGAAGACGAGAGAAACCGGATCGAAAATTCGGGCGGTTATGTAGATTATTGCCGTGGTGCGTGGAGAGTTCAAGGAACGTTGGCTGTATCGAGAGCCATTGGAGATGAGCATCTGAAACAGTGGGTGATAGCGGAGCCGGAGACGAGAGTGATGAAGATTGAGGATGATTGTGATTTCTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTGACAAATGAGGAAGCAGTGGACATAGTACAGACTCTGTGCGGGGTAGAGATGGAAAAGCCAAAGCTCTTCTCAGCCTGCAAAGAGCTAGCCGCCTTGTCAACATCAAGAGGCTCAGTCGATGATACCAGCGTCATGATCATCAAATTGCCTTCATTTCTCTGA 1104 51.36 MCAVAVPKATATTPLFSSPKIASLIYKSSLNYCSSSSPSSPRSVSSPRKLHVSASSPSQPQLPPSVSSLAIDTVLKRKRPARIDVPPSSIGFGFGLEKQPEVMEEEGEGYSVFCKRGRRRSAIEDRFSATVRIQGDSRQAFFGVLDGHGGAEVAEIAAKRMSKNVIDQVTRRTDSELEEAIKDGYLATDREVLEEGVGGGGACCVSALIRNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPSREDERNRIENSGGYVDYCRGAWRVQGTLAVSRAIGDEHLKQWVIAEPETRVMKIEDDCDFLILASDGLWDKVTNEEAVDIVQTLCGVEMEKPKLFSACKELAALSTSRGSVDDTSVMIIKLPSFL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10049283 10051639 + Lag0040942.1 Lac13g1146 592302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1146 367 Gene3D - 111 366 IPR036457 -
Lac13g1146 367 PANTHER PROTEIN PHOSPHATASE 104 361 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac13g1146 367 CDD PP2Cc 109 363 IPR001932 -
Lac13g1146 367 SMART PP2C_4 101 361 IPR001932 -
Lac13g1146 367 FunFam probable protein phosphatase 2C 25 102 366 - -
Lac13g1146 367 Pfam Protein phosphatase 2C 113 355 IPR001932 -
Lac13g1146 367 SUPERFAMILY PP2C-like 109 364 IPR036457 -
Lac13g1146 367 ProSiteProfiles PPM-type phosphatase domain profile. 109 363 IPR001932 -
Lac13g1146 367 MobiDBLite consensus disorder prediction 37 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1146 Lac-Chr13:10049283 Lac7g2848 Lac-Chr7:47619653 2.80E-101 dispersed
Lac13g1146 Lac-Chr13:10049283 Lac7g2763 Lac-Chr7:46777990 3.60E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1146 K17506 - csv:101208170 487.648