Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g1160 | ATGGCTTCCCATTCCCCTAATCTCGAGTGTCGGATGTACGAAGCCAAGTACCCCGAGGTCGATATGGCCGTCATGATCCAGGTCAAGAACATTGCCGACATGGGCGCCTATGTTTCTCTTCTCGAGTACAACAACATCGAGGGTATGATTCTCTTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGCTTAATTAAGGTCGGCCGAATCGAGCCCGTCATGGTCCTCAGGGTCGACAAGGAGAAAGGGTATATTGATTTGAGTAAGAGGAGAGTTTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTCGTACACTCTATAATGCGCCATGTTGCTGAGACAATGAATATTGATTTGGAGGACTTGTATATCCATGTTGGCTGGCCTCTATACCGGAAATATGGTCACGCTTTTGAGGCATTCAAGATTATTGTAACTGATCCTGATTCGGTGTTGAATTCTCTCACTCGTGAAGTCAAGGAAGCTGGTCCGGATGGACAGGAGGTAACTAAGGTAGTTCCTGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCTCAGCCCTTGAAGGTTCGAGCTGATATTGAGATGAAGTGTTTCCAGTTTGACGGTGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGCTGGGAATGATGATTGTCCTGTAAAAATTAAATTGGTTGCTCCTCCACTCTATGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCACTGCTTGCACTGAGGCAATCGAGCATCATAAGGGAAAGCTTGTGGTGAAGGAAGCACCTAGAGCGGTGAGTGAAAGAGACGACAAATTACTTGCTGAGCACATGGCGAAGCTGCGACAAGACAATGAAGAGATCAGTGGCGACGAGGACAGTGAAGAAGAGGAAGACACGGGAATGGGAGAAGTTGATGTTGAAAATGCAGGGTCTGGGATCACCGAGTAA | 1035 | 46.38 | MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAITACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITE | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 10197970 | 10202118 | - | Lag0040956.1 | Lac13g1160 | 592316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g1160 | 344 | ProSiteProfiles | S1 domain profile. | 21 | 92 | IPR003029 | GO:0003676(InterPro) | |
| Lac13g1160 | 344 | SMART | S1_6 | 19 | 92 | IPR003029 | GO:0003676(InterPro) | |
| Lac13g1160 | 344 | FunFam | Eukaryotic translation initiation factor 2 subunit alpha | 7 | 94 | - | - | |
| Lac13g1160 | 344 | FunFam | Eukaryotic translation initiation factor 2 subunit alpha | 95 | 199 | - | - | |
| Lac13g1160 | 344 | Pfam | S1 RNA binding domain | 18 | 92 | IPR003029 | GO:0003676(InterPro) | |
| Lac13g1160 | 344 | Gene3D | - | 6 | 94 | IPR012340 | - | |
| Lac13g1160 | 344 | Pfam | Eukaryotic translation initiation factor 2 alpha subunit | 130 | 260 | IPR011488 | GO:0003723(InterPro)|GO:0003743(InterPro) | |
| Lac13g1160 | 344 | FunFam | Eukaryotic translation initiation factor 2 subunit 1 | 205 | 327 | - | - | |
| Lac13g1160 | 344 | SUPERFAMILY | eIF-2-alpha, C-terminal domain | 203 | 319 | IPR024055 | - | |
| Lac13g1160 | 344 | MobiDBLite | consensus disorder prediction | 316 | 332 | - | - | |
| Lac13g1160 | 344 | MobiDBLite | consensus disorder prediction | 309 | 344 | - | - | |
| Lac13g1160 | 344 | SUPERFAMILY | eIF2alpha middle domain-like | 94 | 199 | IPR024054 | - | |
| Lac13g1160 | 344 | Coils | Coil | 306 | 326 | - | - | |
| Lac13g1160 | 344 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 | 6 | 333 | IPR011488 | GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER) | |
| Lac13g1160 | 344 | CDD | S1_IF2_alpha | 18 | 93 | IPR044126 | GO:0003723(InterPro) | |
| Lac13g1160 | 344 | Gene3D | Translation initiation factor 2; subunit 1; domain 2 | 95 | 199 | IPR024054 | - | |
| Lac13g1160 | 344 | SUPERFAMILY | Nucleic acid-binding proteins | 10 | 92 | IPR012340 | - | |
| Lac13g1160 | 344 | Gene3D | EIF_2_alpha | 205 | 327 | IPR024055 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g1160 | K03237 | - | csv:101209681 | 639.032 |