Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g1175 | ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA | 504 | 50.6 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 10408470 | 10409854 | + | Lag0040971.1 | Lac13g1175 | 592331 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g1175 | 167 | Coils | Coil | 85 | 105 | - | - | |
Lac13g1175 | 167 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Lac13g1175 | 167 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
Lac13g1175 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 115 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0891 | Lac-Chr12:9335793 | Lac13g1175 | Lac-Chr13:10408470 | 1.70E-42 | dispersed | |
Lac13g1175 | Lac-Chr13:10408470 | Lac9g2362 | Lac-Chr9:42835271 | 8.90E-47 | dispersed | |
Lac13g1175 | Lac-Chr13:10408470 | Lac10g1284 | Lac-Chr10:11430852 | 6.40E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23198 | PF03195 | LOB | 3.80E-42 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g1175 | - | - | - | 0.0 |