Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1175 ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 504 50.6 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10408470 10409854 + Lag0040971.1 Lac13g1175 592331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1175 167 Coils Coil 85 105 - -
Lac13g1175 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Lac13g1175 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Lac13g1175 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0891 Lac-Chr12:9335793 Lac13g1175 Lac-Chr13:10408470 1.70E-42 dispersed
Lac13g1175 Lac-Chr13:10408470 Lac9g2362 Lac-Chr9:42835271 8.90E-47 dispersed
Lac13g1175 Lac-Chr13:10408470 Lac10g1284 Lac-Chr10:11430852 6.40E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23198 PF03195 LOB 3.80E-42 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1175 - - - 0.0