Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1196 ATGTCTCTAACCAAGATGAAAACTAAGATAATTTCTTTTCCCTCCAGCCGCCTCACGCCTCCCCCTCACCCTCTCGTTCGCGTCTCTCTCTCTCTCCCTCTCCCGTGCCGCCGTGCTCCCGCCGACGCCTCCTCTCCGACAGCGACAGCCGCCGCACGTCTACCGCCAGCCCTGTGTAACGCCGTGAGCAGAGGACCCGTGCCGCCGCTGGTCTGTACTGATCGTTCCTGGAGCGTTTTTGTTGCTGTCGCCGCCGTCTTCCTCGTTCCCTGCACGCCGTTAGTGAGCTTCAGCAGTGGTGTTCAAGTTGGGGATTTATTAGGATTTTTGGTGTTGGTTGAGTTGCTGTCCAGTGAAGAGCGTTACCCACAAAATTCCCTGTTCATATTTGCAAAGTTGTGTAGAGGAAAAATGGAAGCAGACGATCTTCCAGAAGCAAAGGCAGCCCTCAGCCTCCTCCGCAGTAGACTCTGCAACTCTAGTTTCTATTTCAAGCCTCTGTCCGATTCTTCTGATAACAATTATAGCCAATTGAAGTTTATGATATCCAGTTCGGTGATCGAAGCGTGTAATAATTCGATCCTGCTTCTCGGCCCCCGGGGTACAGGGAAAAGGGCGGTGCTGGAACTCGTTCTGCAAGATCTATTACTGGAATATCCTGATATGATTTCCGTGATAAAGTTGAGTGGTCTTTTGCATTGCGAAGACGACATTGGAGCTTTCAAGGAGATTGCTAGGCAGCTTTGCTTGGAGTATGAATTATCATTCTCAAAAACGGCATCCTTTGACGATAACTCCCAGTTTATGATAGCTATGCTACGGAAGTGTGGCTTGGCACATAAGACAATTGTTTTTGTACTGGATGAATTTCATCTTTTTGCACAAGGAAAACAACGGTTACTTTACAGTTTGTTAGATGCCATACGATCAGTGTCATCGCAAGGTGTTGTTATTGGCATCAGTTGTCAATTGGATGCTGATCAGCTACTTGAGAAAAGAGTAAGATCTCGTTTCTCCCCTAGAAAGCTGTTATTTCTTCCTCCCCGCAAGGAAGATGTGGAGAGATTGTTGGAGCACATTTTATCATTGCCAATGGATTCAGGCCTTCCTTATGACTACGTTGTTAAATTTAATGCAAAGCTTCACAATATTTTAGCAGATGGGAGATTTAAAAAGATCATTGACTCTTATTTGGACTCTGATTCAACCATCAAACAATTAGTGAGATATCTGTTTTGTGCCGTATCAAAGATGGACTTGAAATCTGGGTTGCTGACCCTTGAGAATTTTGAACTTGCTCTTTCAAATATTCAGAGGCAGCCAAAGCAGGAATATATAAAAGATTGTTCCATATTGGAGCTCTATATTCTGGTATGCATGAGAAGGTTGGAAGTTAAGGAGCAGAATTCATACAACTTCAATTCTGTAATGCAAGAGTACAAGAGTATACACGATTCATTCCGGACATCTGATTATTATTCACGAAGCGTATGCTTACGGGCTTTTGAGCACCTTCTACTGCGTGAATTGATCTGTTTCGCCGACAACCGTGGACATAAACAATCTGTCGAATTTCGACCAGTCAAGCTGTTGTTATCATCTTATGAACTGCATCAGGGATTGAAGTCGTATCATTCATGTCCTGTCATCCTTCAGAAATTATTGAATTGA 1671 44.34 MSLTKMKTKIISFPSSRLTPPPHPLVRVSLSLPLPCRRAPADASSPTATAAARLPPALCNAVSRGPVPPLVCTDRSWSVFVAVAAVFLVPCTPLVSFSSGVQVGDLLGFLVLVELLSSEERYPQNSLFIFAKLCRGKMEADDLPEAKAALSLLRSRLCNSSFYFKPLSDSSDNNYSQLKFMISSSVIEACNNSILLLGPRGTGKRAVLELVLQDLLLEYPDMISVIKLSGLLHCEDDIGAFKEIARQLCLEYELSFSKTASFDDNSQFMIAMLRKCGLAHKTIVFVLDEFHLFAQGKQRLLYSLLDAIRSVSSQGVVIGISCQLDADQLLEKRVRSRFSPRKLLFLPPRKEDVERLLEHILSLPMDSGLPYDYVVKFNAKLHNILADGRFKKIIDSYLDSDSTIKQLVRYLFCAVSKMDLKSGLLTLENFELALSNIQRQPKQEYIKDCSILELYILVCMRRLEVKEQNSYNFNSVMQEYKSIHDSFRTSDYYSRSVCLRAFEHLLLRELICFADNRGHKQSVEFRPVKLLLSSYELHQGLKSYHSCPVILQKLLN 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10649263 10656377 + Lag0040992.1 Lac13g1196 592352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1196 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 365 IPR027417 -
Lac13g1196 556 Gene3D - 171 347 IPR027417 -
Lac13g1196 556 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 356 540 IPR032705 -
Lac13g1196 556 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac13g1196 556 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 143 554 IPR016527 GO:0000808(InterPro)|GO:0003677(InterPro)|GO:0003688(PANTHER)|GO:0005634(InterPro)|GO:0005664(PANTHER)|GO:0006260(InterPro)|GO:0006270(PANTHER)
Lac13g1196 556 FunFam Origin of replication complex subunit 4 172 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1196 Lac-Chr13:10649263 Lac5g0692 Lac-Chr5:8574252 4.10E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1196 K02606 - csv:101220845 691.034