Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1198 ATGGAGGAAATCGAAACCCCATTTGATTTCAACTCTTGTTGGAAATACCCACTTGGGGATTTTGTTGATTGGCTCTGTTTTTCTGCCAAGGAGGAGGAGGAGGAGAAGTGGAGGATTTCCAGCAGAAACTCTCGCGGGTTTGTTTCTTCTTCTTCTTTTCTTCGTTTTGGATTGGTTCTGTTCTTTCTGGTGGTGAATTTGGTCTGTGTTCGGCCTGTTTTGAGTCAGGATTGGGATGGTGTGGTTGTGACTCAGGCTGATTTTCAATCCCTTGAGGCATTTAAGCAAGAACTTGATGATCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGATGGGTTGGGATTAAATGTGCTAAGGGACAGGTTATTGTAATACAGCTTCCATGGAAGGGATTGGGAGGTAGAATCACTGAGAAGATTGGCCAGCTTCAGGCTCTTAGGAAGCTAAGTTTACATGACAACTTGATTGGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCGGGTTCGATCCCGGCGTCGTTGGGGCTCTGTCCTCTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACTATCCCTCCTAGTTTGGCTAACTCCACCAAGCTCTATTGGCTTAACTTGAGCTACAACTCGTTTTCGGGTCCGATCCCGACGAGCCTCGTTCGATCGGTGTCGCTTACTTTCCTTTCTCTTGAACACAACAATCTCTCAGGCAGCATTCCTGACTCTTGGGGCGGCGATGCCACCGGGCGAAACCGAGTGTTTCAGCTCAAGTCTTTGACTCTTGATGACAACCTTCTCTCAGGTACCATACCAACTTCTTTGAGCAAGTTAAGTGAGCTTCAAGTGGTTTCCCTTAGCCACAATAGGTTGAATGGTGGCATTCCTGAAGAAATTAGTAGGCTTTCTCTGCTCAAAACTTTGGATGTTTCTAACAATTTCCTTAATGGAAGTCTGCCCCAAAGTTTTGATAGATTGAGAAATCTCTCTGTTCTCAACTTGAGTAGAAACAGATTCAATGGTCAAATCCCTGCTACTTTAGGGAACATTTCAACACTTACACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCCTACAACAACCTTTCGGGTTCGGTTCCTCCGGCGCTTGCCGAAAAATTCAATGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGACTCCGTGCCCGTCCCCAGCCCCTTCTCAAGAAGCTCCAGCTCCTCCACCGGAAAGTTCGGCTTCCCGACATCGGAAGTTAACTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTCCTAGTATTGGTTATAGTTTTCTTTGTACTGCTTTGCTGCTTGATTAGAAAAAGGGCTGCTTCAAAAGGAAAGGATGGTGGTGAGGCTGCAGCAGCCGGGGCTGCACGGGCCGAGAAGGGCGTCCCTCCGACTAGCAGTGAAGTCGAAGCGGGAGGGGATGCCGGAGGAAAGCTCGTTCATTTCGACGGGCAAACGGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTTAAGAGACTAAGAGAGAAGATCACTAAGAGCCAGAAGGAATTTGAAGCAGAGGTCAACATACTTGGCAAGATCAGGCATCCAAATCTTCTAGCTTTGAGAGCTTATTACTTGGGACCTAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGCCGAACGGGAGTCTCGCAGCGTTCCTGCACGCCCGTGGACCGGACACATCCATCGATTGGCCGACGAGGATGAAGATAGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACGCGCACGAGAACAGCATCCATGGAAACCTGACATCCAGCAACATTCTACTTGATGAGTACATAAATGCTAAGATTGCAGATTTTGGCCTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACTGCAGGAGCACTCGGGTACCGAGCGCCAGAGCTCTCGAAACTGAAGAAAGCCAACACGAAAACCGACATTTACAGCCTTGGAGTGATCATATTGGAGCTCCTAACTGGGAAGTCCCCCGGCGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCGATTGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGGGATGCATCTACCATTGGAGATGAGTTGCTAAACACTCTGAAACTCGCTTTGCATTGTGTCGATCCTTCACCGTCGGCGAGGCCGGAAGTTCAACAAGTTCTGCAGCAACTGGAGGAGATTAGGCCAGAAACTGCTCCCAGTTCTGGGGATGATGGAGCAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2547 47.15 MEEIETPFDFNSCWKYPLGDFVDWLCFSAKEEEEEKWRISSRNSRGFVSSSSFLRFGLVLFFLVVNLVCVRPVLSQDWDGVVVTQADFQSLEAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNLIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHISNNLLTGTIPPSLANSTKLYWLNLSYNSFSGPIPTSLVRSVSLTFLSLEHNNLSGSIPDSWGGDATGRNRVFQLKSLTLDDNLLSGTIPTSLSKLSELQVVSLSHNRLNGGIPEEISRLSLLKTLDVSNNFLNGSLPQSFDRLRNLSVLNLSRNRFNGQIPATLGNISTLTQLDLSQNNLSGEIPASLADLQGLQSLNVSYNNLSGSVPPALAEKFNASSFVGNIQLCGFSGSTPCPSPAPSQEAPAPPPESSASRHRKLTTKDIILIAAGALLLVLVIVFFVLLCCLIRKRAASKGKDGGEAAAAGAARAEKGVPPTSSEVEAGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHAHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGAPSTSE 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10665925 10668568 - Lag0040994.1 Lac13g1198 592354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1198 848 MobiDBLite consensus disorder prediction 514 533 - -
Lac13g1198 848 Gene3D Ribonuclease Inhibitor 84 244 IPR032675 -
Lac13g1198 848 SMART LRR_typ_2 326 349 IPR003591 -
Lac13g1198 848 SMART LRR_typ_2 302 325 IPR003591 -
Lac13g1198 848 SMART LRR_typ_2 151 175 IPR003591 -
Lac13g1198 848 SMART LRR_typ_2 350 374 IPR003591 -
Lac13g1198 848 SMART LRR_typ_2 398 422 IPR003591 -
Lac13g1198 848 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 71 837 IPR052451 -
Lac13g1198 848 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 84 266 - -
Lac13g1198 848 CDD STKc_IRAK 561 826 - -
Lac13g1198 848 Pfam Leucine Rich Repeat 154 173 IPR001611 GO:0005515(InterPro)
Lac13g1198 848 SUPERFAMILY Protein kinase-like (PK-like) 559 827 IPR011009 -
Lac13g1198 848 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g1198 848 MobiDBLite consensus disorder prediction 825 848 - -
Lac13g1198 848 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515(InterPro)
Lac13g1198 848 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515(InterPro)
Lac13g1198 848 Pfam Leucine rich repeat 280 337 IPR001611 GO:0005515(InterPro)
Lac13g1198 848 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Lac13g1198 848 Gene3D Ribonuclease Inhibitor 245 341 IPR032675 -
Lac13g1198 848 FunFam Leucine-rich repeat receptor-like protein kinase 540 631 - -
Lac13g1198 848 Pfam Leucine rich repeat N-terminal domain 86 125 IPR013210 -
Lac13g1198 848 Gene3D Ribonuclease Inhibitor 342 437 IPR032675 -
Lac13g1198 848 Gene3D Transferase(Phosphotransferase) domain 1 633 837 - -
Lac13g1198 848 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1198 848 MobiDBLite consensus disorder prediction 442 463 - -
Lac13g1198 848 SUPERFAMILY L domain-like 124 420 - -
Lac13g1198 848 FunFam Pollen receptor-like kinase 1 632 836 - -
Lac13g1198 848 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 273 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3262 Lac-Chr10:46608228 Lac13g1198 Lac-Chr13:10665925 3.80E-165 dispersed
Lac13g1198 Lac-Chr13:10665925 Lac3g0862 Lac-Chr3:6916549 1.00E-69 dispersed
Lac13g1198 Lac-Chr13:10665925 Lac6g2971 Lac-Chr6:47280640 7.00E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85865 PF07714 PK_Tyr_Ser-Thr 1.30E-40 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1198 - - - 0.0