Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1219 ATGAAAATGGGAGTTTTTAGCCTCGATCGTCTTTCATCGCTGTTTGCAGTTTCTCCACTCCAGAATCATGCGCACAATAAATCTTTACCATTTTGTTCAAAGCTTTCAAACCCCCACTTCCGATCGAACAAGATTTGGTGCGGAATGCCTGAGAGTGGAATTCGGCAAAACCCCACAAGCGGCAGAGCTTCCACCTCCAAGAACAGGATGGAGGAATACAATTTGGCTATGAAGAAGATGATGAGAAACCCCTATGAGTATCACCATGAACTGGGTATGAACTATACTCTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCCGAAGATATTGATTTCTTGAAAGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGACAAGGATGTCGAGTATTGGGGAATCAACTTACAATCCATTATAGATAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCTAAAGATTTTGATCCAGATTCCTTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGCTAGAATGGGCGATTTCAGAGGGCAAAGGAAAAGTTTATGTGCACTGCACCGCCGGACTGGGAAGGGCCCCTGCCGTTGCAATAGCGTACCTGTACTGGTTTTGCGGAATGAATGCAACATATGAAGCCCTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCGATCCGCGGAGCCACATATGATCTATCTAAAAATGATCCATGGAAAGAGCCATTTGAGAGCCTCCCAGATAATGCATTCGAGGATATTGCAGATTGGGAAAGAAACTTGATTCAGGATCGGATTCGTTCTCTTCGTGGAACTTAG 849 43.35 MKMGVFSLDRLSSLFAVSPLQNHAHNKSLPFCSKLSNPHFRSNKIWCGMPESGIRQNPTSGRASTSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTLIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGINLQSIIDRCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPSKKAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIQDRIRSLRGT 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10799857 10802136 - Lag0041015.1 Lac13g1219 592375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1219 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 228 IPR029021 -
Lac13g1219 282 CDD DSP_laforin-like 93 238 IPR045204 GO:0019203(InterPro)
Lac13g1219 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 171 210 IPR000387 GO:0016311(InterPro)
Lac13g1219 282 Gene3D Protein tyrosine phosphatase superfamily 77 282 IPR029021 -
Lac13g1219 282 Pfam Dual specificity phosphatase, catalytic domain 118 228 IPR000340 GO:0016311(InterPro)
Lac13g1219 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 255 IPR020422 GO:0006470(InterPro)
Lac13g1219 282 SMART dsp_5 94 234 IPR020422 GO:0006470(InterPro)
Lac13g1219 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 57 251 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Lac13g1219 282 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 77 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0651 Lac-Chr13:4918769 Lac13g1219 Lac-Chr13:10799857 4.50E-35 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1219 - - - 0.0