Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1221 ATGATTATTTGTGACGGTGTATGTAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCCTCCACAGCAAGTTATGGGGAGGCGACACACGCTGCAGGGTCCTCCTGGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTGAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCTTACTTCTCCCCCCATGAGCCCCACAAGTTCGCCTCCGTCCACAAGGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTCATGGAAGTTCCCGAGAATCAGAGAGCCGATGCTGCGAACAGCCTAGTTTATGAAGCTAATGTGAGGCTGAGAGATCCTGTCTATGGCTGCATGGGAGCCATTTCAGCTTTACAACACCAAATTCAAGCTTTACAAGCTGAGCTCAATGCAGTTAGAGCTGAGATATTGAGATACAAATATAGAGAAGCTAATATGATTCACTCTTCTCCTCAGCAACATGTGCCTTTTCTTTCTTCTTCAGCCGAGGTCGTTTCGGTCGCCGTACCGCCGCCACCACCACCTCCGCCGCTACCTCCACCGTCCCATCAGGATGCTTCTTCCTCTTCCTCGTCGTTGTACAACCGGCCCGCGGCGGCTGCTGATTTTAGTACCATTTCAAGTGATGAAAATGTTACCTATTTTGTTAGTACTTCTACTGCTCATCAATTGAATTCTTAG 732 48.63 MIICDGVCRERFDEIAKKIKRETDVSSNIPPQQVMGRRHTLQGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRYKYREANMIHSSPQQHVPFLSSSAEVVSVAVPPPPPPPPLPPPSHQDASSSSSSLYNRPAAAADFSTISSDENVTYFVSTSTAHQLNS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10860305 10861315 + Lag0041017.1 Lac13g1221 592377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1221 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 51 184 - -
Lac13g1221 243 Coils Coil 132 159 - -
Lac13g1221 243 MobiDBLite consensus disorder prediction 184 200 - -
Lac13g1221 243 ProSiteProfiles LOB domain profile. 52 153 IPR004883 -
Lac13g1221 243 MobiDBLite consensus disorder prediction 183 212 - -
Lac13g1221 243 Pfam Lateral organ boundaries (LOB) domain 53 150 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1221 Lac-Chr13:10860305 Lac9g2273 Lac-Chr9:42086121 2.20E-38 dispersed
Lac13g1221 Lac-Chr13:10860305 Lac8g2852 Lac-Chr8:45705239 4.60E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23200 PF03195 LOB 8.30E-41 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1221 - - - 0.0