Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1229 ATGGATCTTGAGCACGGGAAGTGTTGGGATACTTCAAAGAAGGATTCTTGGAAAACGATTCTTGTATTGGCCTATCAGAGCCTTGGCGTCGTCTATGGCGATTTGAGCATCTCTCCTCTCTACGTTTACAGAAGCACTTTTGCTGAAGACATCCAACATTCAGATACCAATGAAGAAATCTATGGTGTTCTTTCATTTGTCTTCTGGACTCTCACTATTGTCCCCCTTTTCAAATACGTCTTTGTGGTTCTCAGAGCTGATGACAATGGCGAAGGTGGGACTTTTGCTCTGTACTCATTAATTTGCAGACATGCCAAAGTAAGCCTTCTCCCCAACAGACAAGTTGCAGATGAAGCACTTTCCACTTATTTGCTTGAACATCCACCAGAGAAGAAGAAGCAATCAAAGGTTAAATTGCTGCTGGAGAAACACAGGGCTCTGCATACTTCTTTGTTGATTCTTGTTCTTCTTGGGACTTGTATGGTGATTGGAGATGGGCTTCTCACTCCTGCCATTTCTGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGACCAAGGCTCACCATCAGTATGCCGTGGTTCCAATCACTTGCTTTATCTTGGTTTGTCTATTTGCACTTCAACACTACGGCACACATCGAGTTGGCTTTGTCTTTGCGCCCATTGTATTGACATGGCTACTCTGCATCAGTACCCTTGGCATATACAATATTATACAATGGAATCCACATGTTTATCAGGCTCTTTCTCCTTATTACATGTTCAAGTTTCTGGAGAAGACAAGGAAGAGCGGTTGGATGTCGTTGGGCGGTATATTGTTGTGCATAACAGGCTCAGAAGCAATGTTTGCTGATCTTGGTCACTTCTCATACACTGCAATACAGATTGCTTTCACCTTTCTGGTGTATCCAGCGCTTATATTGGCATACATGGGCCAAGCTGCTTACTTATCACAACATCACTATGCCACCAACAACATTGGCTTCTATGATTCTGTTCCAGAGAGTGTGAGATGGCCAGTGCTTATTATTGCTATACTTGCTTCGGTTGTTGGAAGTCAAGCAATCATCAGTGGAACATTCTCCATTATAAACCAGAGCCAGTCCCTTGGGTGCTTCCCTAGAGTGAAGGTTGTTCATACCTCTGATAAGATCCATGGCCAGATCTACATTCCGGAGATCAATTGGGTACTTATGATTCTCTGTGTTGCGGTTACCATTGGATTTAGAGACATAAAACACCTCGGAAATGCATCAGGTCTAGCTGTGATGACTGTGATGCTTGTGACAACCTGTCTTACATCTTTGGTGATTGTTCTCTGTTGGAACAAATCTCCACTTTTGGCTCTCTCCTTTTTGGTCTTCTTTGGGTCTGTTGAATTGCTCTACTTCTCAGCTTCACTCACCAAGTTCAGGGAGGGCGCTTGGCTCCCCATTCTCCTAGCTCTCTTCCTCATGACCATCATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATTTGATCTTCACAACAAGGTTTCATTAGAATGGCTGCTCGCATTGGGGCCGAGCCTCGGGATTGCTCGTGTCCCAGGCATTGGATTAGTCTTCACTGATCTCACCTCTGGTATCCCTGCCAACTTCTCCCGGTTCGTCACTAACCTTCCAGCATTTCATCGCATCCTTGTCTTTGTGTGTATAAAGTCGGTACCAGTTCCTTTTGTACCTCCAGCAGAGCGATATCTTGTTGGAAGAGATGTGGACTCATTTGAATCTGAATTAGTCAAGAAACTGGCAGACTTCATCCGGTACGATTGGTACAGAAAGCAAACAGGCAACTCTTGCAGCGAGGACGATGCATCCCGTTCAAATGAATCGACAAGCGAGCACAGGCTAGCTGTGATCGGAACCGTAGAATTTGCAGGCGCAAGTGCTAACGAGGAGACTGTGCAGCCTGCAAGCGCATCAGTTGGGTTCCAAACTGTAGACAGCATCACCGATGTGATCGAAATGGAGCCACTGGGAGAAGAAAGAAGAGTAAGGTTCGCCATAGACGACGATTTCGAAGGTGACTCACAAGCTGAAACAGAAGCCCTTCTACACGAAGAGCTAGAAGATCTTGTAGCGGCTCAGCAGTCAGGGACGGCTTTCATTCTCGGCCATTCCCACGTCCGGGCAAAACAGGGATCGTCTCTGTTGAAGAGACTGGCCATTAACTATGGCTTCAACTTCCTGAGAAGGAACTGCAGAGGCGCAGACGTTGCTCTTAAGGTGCCACCAGTATCCCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 2307 45.51 MDLEHGKCWDTSKKDSWKTILVLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSDTNEEIYGVLSFVFWTLTIVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQVADEALSTYLLEHPPEKKKQSKVKLLLEKHRALHTSLLILVLLGTCMVIGDGLLTPAISVFSAVSGLELSMTKAHHQYAVVPITCFILVCLFALQHYGTHRVGFVFAPIVLTWLLCISTLGIYNIIQWNPHVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHYATNNIGFYDSVPESVRWPVLIIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWVLMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWNKSPLLALSFLVFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVPPAERYLVGRDVDSFESELVKKLADFIRYDWYRKQTGNSCSEDDASRSNESTSEHRLAVIGTVEFAGASANEETVQPASASVGFQTVDSITDVIEMEPLGEERRVRFAIDDDFEGDSQAETEALLHEELEDLVAAQQSGTAFILGHSHVRAKQGSSLLKRLAINYGFNFLRRNCRGADVALKVPPVSLLEVGMVYVV 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10972602 10978365 - Lag0041025.1 Lac13g1229 592385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1229 768 Pfam K+ potassium transporter integral membrane domain 23 515 IPR053951 -
Lac13g1229 768 NCBIfam potassium uptake protein 23 767 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac13g1229 768 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 767 IPR003855 GO:0005886(PANTHER)|GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac13g1229 768 Pfam K+ potassium transporter C-terminal domain 693 766 IPR053952 -
Lac13g1229 768 Pfam K+ potassium transporter C-terminal domain 527 581 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1229 Lac-Chr13:10972602 Lac8g0351 Lac-Chr8:4304917 7.30E-277 dispersed
Lac13g1229 Lac-Chr13:10972602 Lac8g2602 Lac-Chr8:43649500 1.10E-267 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1229 K03549 - csv:101211022 1440.63