Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1239 ATGGCTTCTTCCTCACCATTTTCCTCTCTTCTTCTTCCTCTCTTCTTCCTCTCTTTTCGCTCCGTCTTCGCCGACTATGGTGGCTGGCAAAGCGGCCATGCCACCTTCTATGGCGGTGGCGACGCATCTGGTACCATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGGACGAACACGGTGGCGCTGAGCACGGCGCTGTTCAACAACGGCCTCAGCTGCGGCGCTTGCTACGAAATGACATGCACCAACGACCCCAAATGGTGCCTTCCCGGAACCATCACCGTCACCGCCACCAACTTCTGCCCCCCCAACTTCGCCCTCCCCAACAACAACGGCGGCTGGTGCAACCCTCCCCTCCAGCACTTCGACATGGCCGAGCCCGCCTTCCTCCAGATCGCTCAGTACCGCGCCGGAATCGTCCCCGTCTCCTTTCGGAGAGTGTCATGTGTGAAGAAAGGTGGAGTGAGGTTCACAATCAATGGCCACTCGTACTTCAACCTTGTCCTAATCACGAACGTTGGCGGCGCTGGTGACGTCCATTCCGTGTCGATAAAGGGCTCTCGAACTGGATGGCAAGCCATGTCCCGAAATTGGGGCCAAAACTGGCAGAGTAACAACTATCTCAATGGTCAAGGCCTTTCTTTTCAAGTCACTCTTAGCGATGGTCTTGGGAGAGGATCGGGTGGTGGTGGTGACGATGAGGGTAGAGATAGGGAAGGGGTATGTTATGAGGGGGAAGACGTGGCCTGCAAGACAGTAAACCTGCACACCGGTGCGGTGCTCGCCACATCGGCTCCGATGCTTAAGTCAGCAAGCAGAACGGTGGGGAGTGGAAAAGTCAAACCAGGCAAAACCGGGACTGACGGAGGCGGTAGGGGCCTAATGGCATCGGACAGACTCGGCCTGCGCGAGCGGGCCGAGTAG 939 57.51 MASSSPFSSLLLPLFFLSFRSVFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTITVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVSCVKKGGVRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGLGRGSGGGGDDEGRDREGVCYEGEDVACKTVNLHTGAVLATSAPMLKSASRTVGSGKVKPGKTGTDGGGRGLMASDRLGLRERAE 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11115619 11122434 - Lag0041035.1 Lac13g1239 592395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1239 312 CDD DPBB_EXPA_N 28 154 - -
Lac13g1239 312 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Lac13g1239 312 Pfam Lytic transglycolase 64 149 IPR009009 -
Lac13g1239 312 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 SUPERFAMILY Barwin-like endoglucanases 14 177 IPR036908 -
Lac13g1239 312 Gene3D - 159 230 IPR036749 -
Lac13g1239 312 SMART dpbb_1 64 149 IPR007112 -
Lac13g1239 312 Gene3D - 18 154 IPR036908 -
Lac13g1239 312 FunFam Expansin 18 155 - -
Lac13g1239 312 PANTHER EXPANSIN-A15 15 227 IPR002963 GO:0009664(InterPro)
Lac13g1239 312 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 227 IPR007117 -
Lac13g1239 312 SUPERFAMILY PHL pollen allergen 156 227 IPR036749 -
Lac13g1239 312 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Lac13g1239 312 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Lac13g1239 312 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Lac13g1239 312 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Lac13g1239 312 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Lac13g1239 312 Pfam Expansin C-terminal domain 160 227 IPR007117 -
Lac13g1239 312 MobiDBLite consensus disorder prediction 277 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1239 Lac-Chr13:11115619 Lac3g0609 Lac-Chr3:4734490 1.80E-101 dispersed
Lac13g1239 Lac-Chr13:11115619 Lac8g2843 Lac-Chr8:45632129 1.10E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1239 - - - 0.0