Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1241 ATGGAAATCCCCAATCCCTCCAATCAAATGGCTTCCTCTTCCAACCCCTCCGCCCCTTTTCGCCCTTCCTTCCACCGCCGAGCCCATTCCGAGGTCCATTTCCGGATTCCGGACGATCTCGATCTCGTTTCCGACCCCTTCGATGGACCCTCTTCCGGATTTGGAGATCTGGGTTTCGAGGATGATCTCTTGTGCACCTTCATGGACATCGAGAAGATCGGATCCAAAATCGACAGTGGGTCCTCGTCGAAATCTGAAGCCGCTGCCGGTGGCGGTGCTGCGGCGGACAATGTCGATGGGGAGAAAGTTGTTTCCCGCCCGAGGCACCGCCATAGCAATTCTGCTGATGGGTCCTCCATTATGGAGTCCATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTTGCTGAGCTGTGGACTATTGATCCTAAGCGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAGAGCCTTCAGACTGAAGCGACAACTCTTTCTGCACAGCTCACGTTGTACCAGAGAGATACTACAGGGCTTTCAACCGAAAACACAGAGCTCAAACTTCGCTTACAAGCTATGGAACAGCAAGCTCATTTACGCGACGCTCTTAATGAAGCATTGAAAAAGGAAGTCGAGCGGCTCAAGATTGCGACCGGAGAAGTAATGACAGCTACAGATTCGTATAACTTCGGAATGCCTCAAGTTTCATACCCCCAGTCTTGCTTTTCACACCAACCACAACCCGGGCGACACAATCCACAGAGGACGCAAAGGCCCCAAGTTCATCCATACCATCATTCTAGTCTACCGAACCCGCATCAGGCTCTATTTGTTGCATCCCACCAGCCACATGCCTTAACAGAAATGTTTCAGCAGGATCCTATTAGCCGATTGCAGGGTCTCGATATCGGTAGCAGAGGCGCAGAAATAAAGCCAGAAGGCTCCTCCATATCCGTCAGTGAAAGTAGCAGCACATTTTAA 1038 50.48 MEIPNPSNQMASSSNPSAPFRPSFHRRAHSEVHFRIPDDLDLVSDPFDGPSSGFGDLGFEDDLLCTFMDIEKIGSKIDSGSSSKSEAAAGGGAAADNVDGEKVVSRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNEALKKEVERLKIATGEVMTATDSYNFGMPQVSYPQSCFSHQPQPGRHNPQRTQRPQVHPYHHSSLPNPHQALFVASHQPHALTEMFQQDPISRLQGLDIGSRGAEIKPEGSSISVSESSSTF 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11135474 11140868 - Lag0041037.1 Lac13g1241 592397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1241 345 Pfam bZIP transcription factor 144 199 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g1241 345 MobiDBLite consensus disorder prediction 258 290 - -
Lac13g1241 345 Coils Coil 219 239 - -
Lac13g1241 345 MobiDBLite consensus disorder prediction 258 283 - -
Lac13g1241 345 MobiDBLite consensus disorder prediction 76 120 - -
Lac13g1241 345 CDD bZIP_plant_RF2 145 194 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g1241 345 SMART brlzneu 140 204 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g1241 345 MobiDBLite consensus disorder prediction 1 24 - -
Lac13g1241 345 Coils Coil 160 187 - -
Lac13g1241 345 Gene3D - 144 194 - -
Lac13g1241 345 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 300 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac13g1241 345 MobiDBLite consensus disorder prediction 325 345 - -
Lac13g1241 345 MobiDBLite consensus disorder prediction 1 20 - -
Lac13g1241 345 FunFam probable transcription factor PosF21 143 196 - -
Lac13g1241 345 MobiDBLite consensus disorder prediction 101 115 - -
Lac13g1241 345 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 205 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g1241 345 SUPERFAMILY Leucine zipper domain 144 195 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1241 Lac-Chr13:11135474 Lac9g2327 Lac-Chr9:42613932 2.90E-76 dispersed
Lac13g1241 Lac-Chr13:11135474 Lac9g2018 Lac-Chr9:39761196 3.40E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23201 PF00170 bZIP_1 1.40E-08 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1241 - - - 0.0