Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1245 ATGTCCTCCGAAGACATGAATGGCCTCAACTCCCAGCTCGTCTTCCAAGATGAAGCCATGCCCTTCAATTGCTCCGCCACCCCACAGCGCCGCGTCGCCGACCCAGGTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTCGACCGAGACCGATTCTTTGCCCATCAGGGTGGAGATTTTCGCCGGAGTGTGTTTGGTGACGGCCGGAATTGGAGTGCGAGAAATGGAAGTGGGAAAGGATCGGATGAGGATGATGATGAGGACGACGATGATGAAGATGAAGTCGATGATGGTGAGGATGATGTTGAGGGGCTTGTTTCTTTGGATGATGTCAGTAAGTGCGGTAAAACTGCTAACCCCAACAGCAGCAACATTGACAGAAGCGATCAGAGTGGTGGGGGCTTGAAGAATGGGACGAACAAATTGGGAAATGGGAAGCCTAAGCACCATTCTTCTTTTGGTGGAACTTTGTTGGTTAAGGATGGGATGGTTGGCCCTTCAGGGAGTAACACAGGAGCTAATCAGAGTGAGAATCATCCACAGGGAAGGCTGGGGAATTACCCAAATGCGGTTACGATTGCAGAGCATGAAGGTGATGCTTATTATTCCCAGTATTTGCAAGGCACTGAGGGGTCTGCTTCTGGACAGAAGGACTTGGCTATGGAAAATGGATGTGGTTTTGGGAGGAGGGATGTTTCGCTTTCGGGCGAGTCTGGAGAGTCTCTGAGAGGAATTCTCACAGACCCTGTGACGGGCGCTCTCATGGATGATGCGATGATATTACCGTGTGGGCATTCCTTTGGTAGTGGTGGAATAGAACACATTCTTAGAGTAAAATCTTGTTACACGTGTTCTCAGTCAGTTTCTGAAGACTCAATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCGAAGCTTTCCGTCGGGAAGAAGAATTGTTATTTTACCGCTCACCAAAGAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTCGAATCTCATGGATACTCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACCGATCGGGTAATTATCAAGGGGAACAAGAGGACACCGCAGCGGTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTCGACAATGCAGAGAGTGTAAAGTTGCAATACCGCTCACTCGCGAAGGTTCCGAATGATGCAGCATCAAAAACGATAACAAGGAAGATCGCACCGCATTGGCTTTAG 1290 49.46 MSSEDMNGLNSQLVFQDEAMPFNCSATPQRRVADPGPKTRELCGFMDDKLFPVDRDRFFAHQGGDFRRSVFGDGRNWSARNGSGKGSDEDDDEDDDDEDEVDDGEDDVEGLVSLDDVSKCGKTANPNSSNIDRSDQSGGGLKNGTNKLGNGKPKHHSSFGGTLLVKDGMVGPSGSNTGANQSENHPQGRLGNYPNAVTIAEHEGDAYYSQYLQGTEGSASGQKDLAMENGCGFGRRDVSLSGESGESLRGILTDPVTGALMDDAMILPCGHSFGSGGIEHILRVKSCYTCSQSVSEDSIAQNLSLQAAVEAFRREEELLFYRSPKRRRERFEQDKGGYGDSNLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKTITRKIAPHWL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11222633 11226271 - Lag0041041.1 Lac13g1245 592401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1245 429 MobiDBLite consensus disorder prediction 173 190 - -
Lac13g1245 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 318 IPR013083 -
Lac13g1245 429 MobiDBLite consensus disorder prediction 88 111 - -
Lac13g1245 429 SUPERFAMILY RING/U-box 248 319 - -
Lac13g1245 429 MobiDBLite consensus disorder prediction 62 190 - -
Lac13g1245 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 7 419 - -
Lac13g1245 429 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1245 Lac-Chr13:11222633 Lac9g1643 Lac-Chr9:35758780 6.20E-60 dispersed
Lac13g1245 Lac-Chr13:11222633 Lac13g1653 Lac-Chr13:18083887 6.30E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1245 - - - 0.0