Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1245 ATGTCCTCCGAAGACATGAATGGCCTCAACTCCCAGCTCGTCTTCCAAGATGAAGCCATGCCCTTCAATTGCTCCGCCACCCCACAGCGCCGCGTCGCCGACCCAGGTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTCGACCGAGACCGATTCTTTGCCCATCAGGGTGGAGATTTTCGCCGGAGTGTGTTTGGTGACGGCCGGAATTGGAGTGCGAGAAATGGAAGTGGGAAAGGATCGGATGAGGATGATGATGAGGACGACGATGATGAAGATGAAGTCGATGATGGTGAGGATGATGTTGAGGGGCTTGTTTCTTTGGATGATGTCAGTAAGTGCGGTAAAACTGCTAACCCCAACAGCAGCAACATTGACAGAAGCGATCAGAGTGGTGGGGGCTTGAAGAATGGGACGAACAAATTGGGAAATGGGAAGCCTAAGCACCATTCTTCTTTTGGTGGAACTTTGTTGGTTAAGGATGGGATGGTTGGCCCTTCAGGGAGTAACACAGGAGCTAATCAGAGTGAGAATCATCCACAGGGAAGGCTGGGGAATTACCCAAATGCGGTTACGATTGCAGAGCATGAAGGTGATGCTTATTATTCCCAGTATTTGCAAGGCACTGAGGGGTCTGCTTCTGGACAGAAGGACTTGGCTATGGAAAATGGATGTGGTTTTGGGAGGAGGGATGTTTCGCTTTCGGGCGAGTCTGGAGAGTCTCTGAGAGGAATTCTCACAGACCCTGTGACGGGCGCTCTCATGGATGATGCGATGATATTACCGTGTGGGCATTCCTTTGGTAGTGGTGGAATAGAACACATTCTTAGAGTAAAATCTTGTTACACGTGTTCTCAGTCAGTTTCTGAAGACTCAATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCGAAGCTTTCCGTCGGGAAGAAGAATTGTTATTTTACCGCTCACCAAAGAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTCGAATCTCATGGATACTCCAAGGGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACCGATCGGGTAATTATCAAGGGGAACAAGAGGACACCGCAGCGGTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTCGACAATGCAGAGAGTGTAAAGTTGCAATACCGCTCACTCGCGAAGGTTCCGAATGATGCAGCATCAAAAACGATAACAAGGAAGATCGCACCGCATTGGCTTTAG 1290 49.46 MSSEDMNGLNSQLVFQDEAMPFNCSATPQRRVADPGPKTRELCGFMDDKLFPVDRDRFFAHQGGDFRRSVFGDGRNWSARNGSGKGSDEDDDEDDDDEDEVDDGEDDVEGLVSLDDVSKCGKTANPNSSNIDRSDQSGGGLKNGTNKLGNGKPKHHSSFGGTLLVKDGMVGPSGSNTGANQSENHPQGRLGNYPNAVTIAEHEGDAYYSQYLQGTEGSASGQKDLAMENGCGFGRRDVSLSGESGESLRGILTDPVTGALMDDAMILPCGHSFGSGGIEHILRVKSCYTCSQSVSEDSIAQNLSLQAAVEAFRREEELLFYRSPKRRRERFEQDKGGYGDSNLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDAASKTITRKIAPHWL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11222633 11226271 - Lag0041041.1 Lac13g1245 592401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1245 429 MobiDBLite consensus disorder prediction 173 190 - -
Lac13g1245 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 318 IPR013083 -
Lac13g1245 429 MobiDBLite consensus disorder prediction 88 111 - -
Lac13g1245 429 SUPERFAMILY RING/U-box 248 319 - -
Lac13g1245 429 MobiDBLite consensus disorder prediction 62 190 - -
Lac13g1245 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 7 419 - -
Lac13g1245 429 MobiDBLite consensus disorder prediction 120 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1245 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1245 Lac-Chr13:11222633 Lac9g1643 Lac-Chr9:35758780 6.20E-60 dispersed
Lac13g1245 Lac-Chr13:11222633 Lac13g1653 Lac-Chr13:18083887 6.30E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g3081 . 2 723 Plant U-box Gene Family AT5G57035 55.4 9.9e-229 790.8
Lac13g1245 . 196 429 Plant U-box Gene Family AT5G05230 58.6 2.1e-69 260.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40