Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1247 ATGCGAGCATTGTTGAAGATGAAACGGCTGATTGAGCTCTTCTTCTTGTTCGTTTTGGCTCCACTCTGTGTGAGATGTGCAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCCGCCGTTCAAGATCCGAAGCAGAACCTCGCGACCTGGGACGAAGATGACGATAGTCCCTGCAACTGGAAGGGTGTTGAATGCAGTCCCAGATCCAACCGGGTCGTCGAGCTCAACCTCGATGGGTTCTCTCTCTCGGGTCGGCTCGGGCGGGGGCTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCTCGAAGAACAATCTTAGTGGAAATATAAGCCCCAATTTCGCTCGAGTCAATAATCTTCAGGTGATTGATTTGAGCGGGAATAATTTCTCCGGGTCTGTTCCGGATGATTTTTTTCGTCAATGTAGGTCTTTGAGAGTTGTTTCTTTGGCCAACAACAAATTTTCTGGGAAAATTCCTGATAGTTTGAGCTTGTGTGGGAGTCTTATTGCAGTTAACTTGTCCTCGAATCAGTTTTCGGGTCCTTTGCCTTCTGGGATTTGGTCTCTCGGTGGGCTTCGATCATTGGACTTGTCCGATAATGCTTTGGTGGGTGAAATTCCGAAGGTAATTGAAAATTTGTATAATCTTCGGACTCTTAACTTGAGGAAGAATCGATTTTCTGGACAGATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAATCTTCCTCAGATCATGCAGAAACTTGTTTTGTGTAGTAATCTGATTTTAAGCAGGAATTTGCTCGAAGGAAATTTTCCAGAGTGGATAGGAGAAATGAAAGGCCTTGAAACTCTGGACTTTTCTAAGAACAATTTCACCGGCCACATTCCAACTACGATAGAGAATCTTCAATACCTGAAAGTACTGAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAGTCTGTGATGAAATGCCAAAGCCTTTTGGCGATAGATTTCAGTCACAATTCAATTGCGGGAAATCTTCCAGCGATCAGAAATTTTGAAAAGCTGCAGTTTCTGAACCTGTCTGGGAATTCTTTTGTTGGTCCAATTCCAGAAACTATAGGAGATCTGAAAGCTTTGAGCATTCTTGATTTGAGTAGGAATCAGCTGAATGAAAGCATTCCTGAGGCAATTGGAGGAGCTGTGTCCCTAATGGAGCTGAAGCTGGAAGAAAATTTTCTGGGGGGTGAAATTCCCTCTTCAATTGGTCATTGTTCTTCCCTTACAACTTTGTTCATATCACACAATAACTTAACTGGCCCGATACCAGCGGCATTAGCTAAACTCTCTCATCTCCAAAATGTTGACTTATCATTTAACAACCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTATGTTCAATATTTCTCACAACGACCTCAAGGGTGAGCTGCCTGCTGGTGTATTCTTTAACACCATCTCCCCTTCATCTGTTGCTGGCAATCCGTCCCTCTGTGGCTCTGTCGTTAATAAGTCTTGCCCTTCTGTCCTTCCAAAACCTATTGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTATTAATTATAGAAGAAATCGAAGTATCCTCAGCATTTCTGCACTAGTTGCCATTGGCGCTGCTGCTTTCATCATCATTGGCGTAATATTGATCACCATCCTCAACATTCGTGTTCAATCGCCCACATCTTCTTCATCTGCAGCTGCACTTGCATTATCTGTGGGGGATGATTTCAGTCATTCCTCCAGTCCTGATGCGAATTCTGGAAAGCTTGTGGTGTTGTCAGGAGAGCTAGACTTTAGCACAGGAGCACATGCGCTGCTGAACAAGGATTGTGAACTTGGGCGAGGTGGATTTGGAGCAGTTTACCATACTGTTCTGCGGGACGGACACTCAGTTGCAATCAAGAAGCTTACCGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTTGAGAGGGAAGTTAGGAAGTTTGGGAATGTCAGGCACCAAAATCTCGTGGCACTCGAAGGTTATTATTGGACTCCCTCACTACAGCTCCTTATATACGAATTTGTCTCTGGGGGTAGCTTGTATGGGCTGCTCCACGAAGCATCGGATGACAATGTCCTGTCGTGGAATGAGAGGTTCGACATAATTCTCGGCACAGCAAAAGGACTGGCTCACTTGCATCAATCAAACACAATCCACTACAACATAAAATCCAGCAATATTCTTATTGATTGCAATGGTCAACCTAAGGTGGGAGATTATGGTCTAGCAAGATTGCTGCCGATGTTAGATCGTTATGTTTTAAGTAGCAAGATCCAGAGTGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTGAAGATAACCGAAAAATGTGATGTGTACGGCTTTGGGATCTTGATTCTAGAGGTAGTAACAGGGAAGAGACCTGTCGAGTACATGGAAGACGACGTTGCAGTTCTCTGCGACATGGTCAGAAGTTCAGTGGAAGAAGGAAGGGCCGAAGAATGCATCGACAGGAAGCTGAGGGGGAATTTCCCAGCCGAAGAGGCCATTCCTGTGTTAAAATTAGGTTTAATCTGCACCTCCCATGTGCCATCAAATCGGCCCGACATGAGAGAAATGGTCAAGATATTGGAGATGATCAAATGCCCGTCAGAATTACAAGAGGAGTTAGGATAA 2778 44.46 MRALLKMKRLIELFFLFVLAPLCVRCANLSLNDDVLGLIVFKAAVQDPKQNLATWDEDDDSPCNWKGVECSPRSNRVVELNLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNISPNFARVNNLQVIDLSGNNFSGSVPDDFFRQCRSLRVVSLANNKFSGKIPDSLSLCGSLIAVNLSSNQFSGPLPSGIWSLGGLRSLDLSDNALVGEIPKVIENLYNLRTLNLRKNRFSGQIPDGIGSCLLLRSIDLSENSFSGNLPQIMQKLVLCSNLILSRNLLEGNFPEWIGEMKGLETLDFSKNNFTGHIPTTIENLQYLKVLNLSSNGFTDSFPESVMKCQSLLAIDFSHNSIAGNLPAIRNFEKLQFLNLSGNSFVGPIPETIGDLKALSILDLSRNQLNESIPEAIGGAVSLMELKLEENFLGGEIPSSIGHCSSLTTLFISHNNLTGPIPAALAKLSHLQNVDLSFNNLNGTLPKQLSNLPNLLMFNISHNDLKGELPAGVFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSINYRRNRSILSISALVAIGAAAFIIIGVILITILNIRVQSPTSSSSAAALALSVGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGNVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYGLLHEASDDNVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVRSSVEEGRAEECIDRKLRGNFPAEEAIPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11248380 11251534 - Lag0041043.1 Lac13g1247 592403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1247 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 636 718 - -
Lac13g1247 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g1247 925 Pfam Leucine rich repeat 272 327 IPR001611 GO:0005515(InterPro)
Lac13g1247 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515(InterPro)
Lac13g1247 925 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515(InterPro)
Lac13g1247 925 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515(InterPro)
Lac13g1247 925 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 719 920 - -
Lac13g1247 925 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
Lac13g1247 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1247 925 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Lac13g1247 925 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
Lac13g1247 925 Pfam Leucine Rich Repeat 389 409 IPR001611 GO:0005515(InterPro)
Lac13g1247 925 Pfam Leucine Rich Repeat 364 386 IPR001611 GO:0005515(InterPro)
Lac13g1247 925 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Lac13g1247 925 SMART LRR_sd22_2 291 317 - -
Lac13g1247 925 SMART LRR_sd22_2 458 484 - -
Lac13g1247 925 SMART LRR_sd22_2 386 405 - -
Lac13g1247 925 SMART LRR_sd22_2 195 221 - -
Lac13g1247 925 SUPERFAMILY L domain-like 363 507 - -
Lac13g1247 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Lac13g1247 925 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 357 531 - -
Lac13g1247 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524(InterPro)
Lac13g1247 925 SMART LRR_typ_2 291 315 IPR003591 -
Lac13g1247 925 SMART LRR_typ_2 98 121 IPR003591 -
Lac13g1247 925 SMART LRR_typ_2 219 243 IPR003591 -
Lac13g1247 925 SMART LRR_typ_2 458 481 IPR003591 -
Lac13g1247 925 SMART LRR_typ_2 195 218 IPR003591 -
Lac13g1247 925 SMART LRR_typ_2 122 146 IPR003591 -
Lac13g1247 925 SMART LRR_typ_2 386 410 IPR003591 -
Lac13g1247 925 SMART LRR_typ_2 482 506 IPR003591 -
Lac13g1247 925 PANTHER OS05G0588300 PROTEIN 273 382 IPR050994 -
Lac13g1247 925 SUPERFAMILY RNI-like 79 400 - -
Lac13g1247 925 CDD STKc_IRAK 648 912 - -
Lac13g1247 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Lac13g1247 925 Gene3D Ribonuclease Inhibitor 314 532 IPR032675 -
Lac13g1247 925 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Lac13g1247 925 Gene3D Ribonuclease Inhibitor 191 311 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1247 Lac-Chr13:11248380 Lac7g1197 Lac-Chr7:11096345 1.70E-22 dispersed
Lac7g1382 Lac-Chr7:13681838 Lac13g1247 Lac-Chr13:11248380 9.90E-30 dispersed
Lac13g1247 Lac-Chr13:11248380 Lac8g2839 Lac-Chr8:45589580 1.20E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85866 PF07714 PK_Tyr_Ser-Thr 6.50E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1247 - - - 0.0