Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1253 ATGGAGTCTGGCTCTTCTTCTTCAATGAAATGGGGTTCTGAAAATGGCTATCAACCCCATGTTCTTGCTGTTGATGATAATATTGTCGATCGTAAACTTGTAGAGAAGTTGCTCAAAAACTCCTCTTGTAAAGTAACGACAGCAGAAAATGGTCGCAGTGCTTTGGAGTTCTTGGGTTTGTTGGATGATCATCAACACAACAACTTAGAATGCACCAATAGGTCGAAGGTGAACATGATTATCACAGATTATTGCATGCCAGGAATGTCTGGATACGAACTTCTCAAGAAAATCAAGAGATGTTCGAGGATGAAGGAAGTTCCTGTGGTGATTGTATCGTCGGAAAACGTGCCCACTCGCATTAACAAGTGTTTGGAGGAGGGAGCAGAAATGTTCATGCTGAAACCTTTGAAGCAATCTGATGTGGTGAAACTCAAGTGCCAGTTGATGAACTGA 456 41.89 MESGSSSSMKWGSENGYQPHVLAVDDNIVDRKLVEKLLKNSSCKVTTAENGRSALEFLGLLDDHQHNNLECTNRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVIVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCQLMN 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11307543 11309473 + Lag0041049.1 Lac13g1253 592409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1253 151 Pfam Response regulator receiver domain 21 144 IPR001789 GO:0000160(InterPro)
Lac13g1253 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 146 IPR045279 GO:0009736(InterPro)
Lac13g1253 151 CDD REC_typeA_ARR 21 145 - -
Lac13g1253 151 Gene3D - 15 151 - -
Lac13g1253 151 ProSiteProfiles Response regulatory domain profile. 20 150 IPR001789 GO:0000160(InterPro)
Lac13g1253 151 SMART REC_2 19 146 IPR001789 GO:0000160(InterPro)
Lac13g1253 151 SUPERFAMILY CheY-like 19 145 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1253 Lac-Chr13:11307543 Lac8g2104 Lac-Chr8:39471731 2.80E-39 dispersed
Lac10g2145 Lac-Chr10:31908164 Lac13g1253 Lac-Chr13:11307543 6.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23202 PF00072 Response_reg 7.80E-22 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1253 K14492 - csv:101208898 258.455