Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1267 ATGGAGACCTCCGCTTCCAATTCTGATCCTTACTCCAATTCTTCTTCACCCACAAATGCTCGCAGCTCCTCCAGATTTGGGGTCTCGATCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTCATTTTGGATTACTCGGGAATTCTCCCCACCAGGGCTGTTCGTCATGAATCTGAGCCTGTAATCAACGGCTCTGCCACTCCTGATTTGCGGGTCTATTCTCAAAATCAGAATCACTTGATGATCACTTCTTCCTCTTCCTTGTCTTCGTCTTCTTCTTCTTCTTCTCCTGCCACCACCTCCTCCTCCAGTAATTCCAGCCCCACTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCTAGTGGGTTGTTGCCAAATCAGGCTCTGGTTGGACAAGCTGGTTATGAGCAAAATGGCGGACTTCCCGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACCCCTTCTTCATCTATTCAATCTGGAAGCAGTCGAGTCGATGGAGAATCTGGAAATGGCGTGGAAGAGAATGTTAATAGAGATTCGTCTTATCAGAGATACGATATTCAGCAGGTTGCCAGATGGATTGAACAAATTCTTCCATTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTACAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTCCTTGCTGGTACTTCTATTGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCACAGTGACGATCTTCTGTACCCGTTAATCATGCTTCCACCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTTAATGATACAATGGTGAGGCAGGTTGTAATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGTAGAGGTCATAATTTTCGCCGACAGGGTCAAATTTTAACTCTTGTGGAATACACTCTTCTGTTATACCGTGCATTATTACCCACACCTGTATGGTACCGGTTCTTCTTAAACAAAGATCAAGGGAGCCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATTTGTCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTGGTAAAGCCTGCAGAACTTCGAACATTTGGCGATGGGTCGACCAGCTTACTCTTCCAGTTGTTTTAG 1479 43.75 METSASNSDPYSNSSSPTNARSSSRFGVSIPSLNFFRSPLSVILDYSGILPTRAVRHESEPVINGSATPDLRVYSQNQNHLMITSSSSLSSSSSSSSPATTSSSSNSSPTGEVSIRIIGSGEQDPSPSGLLPNQALVGQAGYEQNGGLPVSGDQPESPDEERVPLVSTPSSSIQSGSSRVDGESGNGVEENVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLIMLPPKTVPPFWHALFIILVNDTMVRQVVMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11465288 11473030 + Lag0041063.1 Lac13g1267 592423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1267 492 ProSitePatterns Zinc finger RING-type signature. 446 455 IPR017907 -
Lac13g1267 492 SMART ring_2 431 468 IPR001841 -
Lac13g1267 492 MobiDBLite consensus disorder prediction 142 193 - -
Lac13g1267 492 MobiDBLite consensus disorder prediction 84 113 - -
Lac13g1267 492 CDD RING-HC_RNFT1-like 429 469 - -
Lac13g1267 492 SUPERFAMILY RING/U-box 424 474 - -
Lac13g1267 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 478 IPR013083 -
Lac13g1267 492 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 492 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Lac13g1267 492 Pfam Ring finger domain 430 469 IPR001841 -
Lac13g1267 492 ProSiteProfiles Zinc finger RING-type profile. 431 469 IPR001841 -
Lac13g1267 492 MobiDBLite consensus disorder prediction 1 25 - -
Lac13g1267 492 MobiDBLite consensus disorder prediction 164 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1267 Lac-Chr13:11465288 Lac1g1751 Lac-Chr1:39012089 5.10E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1267 - - - 0.0