Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g1270 | ATGGAGGGGGCTCTACTTGGTGATTTGGTGTCGATTTTTCCGGCAGGGGTTGCGATGGCGGTGGTGGCAGTGTTGGTCCATTTCTACTATGGGGTGTGGAGAAGGACGGCGGAGGTGAGGAGGAAGCTTGGAGCGCAGGGGGTGACGGGTCCGCCACCGTCGTCCGCTCTTTTTGGAAACTTGCCAGAGATGAAGGAGATCGAGTTGCAGGCGGCGGCCATGGCTTCTCCGCCGCATCATCCGTCGCCAACTGTAGCTCATGATTATATCTCCACCCTCTTTCCCTATTTCGTCAAGTGGAGGAAGCAATACGGCCCATTGTACACGTATTCAACAGGGACGAGGCAGCATCTGTACGCCAACGATGTGGATCTGGTGAAGGACTTGAGCCTCTCCAAGAATCCCGACCTGGACAAGCCACCCTACATCTTCAAGAAGTTCGCGCCGCTCCTCGGCCACGGCGTCATCCTCTCCAACGGCGCCGACTGGACGCTGCAGCACAAGATCATCGCCCCGGAGTTCTTCATGGACCGGGTCCGGGGCATGGCGGCGCTGATGGTGGAGGCGGCGGCGCCGATGCTGGACAAATGGGAGGCCAGGATCGGAGAAGAAGGAGAGGGAGCGGCGGCGGAGATCGAGGTGGAGGAGGGTCTGCGAGGATTCTCGGCGGATGTGATTTCAAGGGCTTGCTTTGGGAGCTCCTATGAGAAAGGGAAGCACATTTTTTCAAAACTTAGGGATCTTCAGAAGTTGATCAGCCACGGAAACCCTCTGTTTCGCTCTTCTTTCAGAAGAATAAAAAAGCTGGAGAAGGAGATCGAGTCATTGATATGGGAGACGGTTCAGCAACGGCAGGAAGAAAGCTCCAAAACGTCGTCGTTGGAGAAGGATCTGTTACAGGTTTTAATGGAAGGCGCCATGAACGACCCAACTATAGGAGCTTGCAATGAGTCCTGCAAGAAGTTCATCGTTGACAACTGCAAGACCATGTACTTTGCCGGCCATGAGTCCACCGCGGCCACCGCCACTTGGGCCTTAATGCTCCTTGCCCTCCACCCTGAATGGCAAGATCGTATCCGCTCTGAGTTCGCTCTAGCTTGCCCCGATGGTCGCCTCGACACGACCGCAATCTCCCAACTCAAATCGCTGAGTATGGTGGTTCAAGAAACGTTGCGACTATACCCACCAGGGGCATACGTGGCAAGGGAGACATTTGCTGAGACACGACTTGGGAACGTGGTGGTTCCGAAGGGCGTCTGTCTATGGACTTTAATTCCAATGTTGCACACAGAAGTAGAAATATGGGGAGAAGATGCGAATGAGTTCAAACCAGAGCGATTCGCCAAAGGCATAGCCAAGGCCTGCAAGTTTCCTCAGGCCTATTTGCCATTTGGGGCAGGTCATCGGACCTGTTTAGGGAAGAACTTTGCATTGGTTCAATTGAAAATTATCATTTCTTTGGTAGTTTCCAAGTTTAGATTCTCACTATCTCCTGATTATCGTCATTCTCCTTCTCATAGAATAATTGTGGAGCCTGACGATGGTGTGAAGATTGTCTTCCAAAAGCTTTGA | 1572 | 52.93 | MEGALLGDLVSIFPAGVAMAVVAVLVHFYYGVWRRTAEVRRKLGAQGVTGPPPSSALFGNLPEMKEIELQAAAMASPPHHPSPTVAHDYISTLFPYFVKWRKQYGPLYTYSTGTRQHLYANDVDLVKDLSLSKNPDLDKPPYIFKKFAPLLGHGVILSNGADWTLQHKIIAPEFFMDRVRGMAALMVEAAAPMLDKWEARIGEEGEGAAAEIEVEEGLRGFSADVISRACFGSSYEKGKHIFSKLRDLQKLISHGNPLFRSSFRRIKKLEKEIESLIWETVQQRQEESSKTSSLEKDLLQVLMEGAMNDPTIGACNESCKKFIVDNCKTMYFAGHESTAATATWALMLLALHPEWQDRIRSEFALACPDGRLDTTAISQLKSLSMVVQETLRLYPPGAYVARETFAETRLGNVVVPKGVCLWTLIPMLHTEVEIWGEDANEFKPERFAKGIAKACKFPQAYLPFGAGHRTCLGKNFALVQLKIIISLVVSKFRFSLSPDYRHSPSHRIIVEPDDGVKIVFQKL | 523 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 11504353 | 11508845 | - | Lag0041066.1 | Lac13g1270 | 592426 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g1270 | 523 | PRINTS | E-class P450 group I signature | 342 | 368 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | E-class P450 group I signature | 322 | 339 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | E-class P450 group I signature | 221 | 239 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | E-class P450 group I signature | 101 | 120 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | Coils | Coil | 266 | 286 | - | - | |
| Lac13g1270 | 523 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac13g1270 | 523 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 25 | 514 | IPR050665 | GO:0004497(PANTHER) | |
| Lac13g1270 | 523 | PRINTS | P450 superfamily signature | 333 | 350 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | P450 superfamily signature | 471 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | P450 superfamily signature | 385 | 396 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | SUPERFAMILY | Cytochrome P450 | 77 | 521 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | Pfam | Cytochrome P450 | 93 | 504 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1270 | 523 | Gene3D | Cytochrome P450 | 32 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g1270 | Lac-Chr13:11504353 | Lac6g2958 | Lac-Chr6:47176422 | 1.50E-79 | dispersed | |
| Lac13g1270 | Lac-Chr13:11504353 | Lac13g1271 | Lac-Chr13:11538889 | 1.70E-245 | tandem | |
| Lac12g2001 | Lac-Chr12:36891632 | Lac13g1270 | Lac-Chr13:11504353 | 2.90E-128 | transposed | |
| Lac12g2036 | Lac-Chr12:37429546 | Lac13g1270 | Lac-Chr13:11504353 | 1.20E-126 | transposed | |
| Lac1g1746 | Lac-Chr1:38932963 | Lac13g1270 | Lac-Chr13:11504353 | 3.90E-57 | transposed | |
| Lac13g1270 | Lac-Chr13:11504353 | Lac8g2821 | Lac-Chr8:45447759 | 6.40E-83 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g1270 | K20661 | - | csv:101216582 | 755.362 |