Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g1271 | ATGGGTGGGGCAGTAATTCCTGGTTTGGTGTCGGTTTTTCCGGCGGCGGTTGTGCTGGCGGTGCTGGCGGTGTTGGTCCATTTGTACTATGGGGTGTGGAGGAGCACGGCGGAGGTGAGGAGGAAGCTGCGAGCGCAGGGGGTGACCGGGCCGCCGCCGTCCGCTCTGTACGGAAACTTGCCGGAGATGAAGGAGATCGAGTTGCAGGCGGCGGCCATGGCTTCTCCGCCGCACCATGCGTCGGCGATTGTCGCTCATGATTACACCTCCACTCTCTTCCCTTATTTCGTCAAGTGGAGGAAGCAATACGGCCCATTATACACGTACTCGACAGGGACGAGGCAACATGTGTACGCCAACAATGTGGATGTGGTGAAGGATCTAAGCCTCTCCACCAATCTCCACTTGGGCAAGCCCTTCTACGTCACCAAGAAGCTCGCCCCCGTCCTCGGCCACAGCGTCATCAGATCCAACGGCGCCGTCTGGGCGCTGCAGCGCAAGATCATCGCCCCGGAGTTCTTCATCCACCGGGTCCGCGCCATGGCCGCCCTCATGCTCCACGCCGCCGCGCCCCTGCTCGAGAAGTGGGAGGGGATCATCGGAGAAGAAGACGGAGCGGCGGCGGCGATTGAGGTGGACGAGGATCTGAGAGCATTCTCGGCGGATGTGATTTCCAGGGCTTGCTTTGGGAGCTCCTATGAGAAGGGGAAGCACATCTTTTCAAAGCTTAGGGATCTTCAGAAGTTGGTTACCCAAGGCAACTTTCTCTTTGGATATTCTTTCAGTGAGATATTTTTTCAAGGAAGCAAACAGAAAAGAATAAAGAAGCTGGAGAAGGAGATCGAGTCATTAATATGGGAGACGGCTCAACAGCGGCAAGAAGAATGCTCGAAAACTTCGTTGTTGGAGAAGGATCTGTTGCAGCTGATAATGGAGGCTGCCATGAATGATCCAAATGTAGGAGCTTGCAATGACTCCTCCAAAAAGTTCATCGTCGACAATTGCAAGAGCATCTACTTCGCCGGCCATGAGTCCACTGCGGCTGCAGCCACCTGGTCCTTGATGCTCCTCGCCCTCCACCCTCAATGGCAAGATCGTATCCGCTCTGAGTTTGCTCAAGCTTGCCCCGATGGCCACCCCGACACGACTCTGATCTCTCAACTCAAATCGGTGAGTATGGTGGTTCACGAAACGTTGCGACTGTACCCACCAGCGGCATTTGTCGCGAGGGAGACATTTGCTGAGACACGATTGGGGAACGTGGTGGTTCCAAAGGGTGTCTGCTTATGGACTTTGATTCCGATGTTGCACAGAGAAGTTGAAATATGGGGAGAAGATGCGAATGAGTTCAAGCCAGAGCGATTCGCCAATGGCATAGCCAAGGCCTGCAAGTTCCCTCAGGCCTATGTGCCATTCGGGGCAGGTCCTCGACTATGCTTAGGGAAGAACTTTGCATTGGTTGAGTTGAAAATCATCATTACTCTTGTAGTTTCCAAGTTTAGATTCTCACTGTCTCCTGAGTATCGCCATTCTCCTTCTTATAGAATGATTGTGGAGCCTGCTAATGGTGTGAAGATTGTCTTCCAAAGGCTTTGA | 1596 | 53.63 | MGGAVIPGLVSVFPAAVVLAVLAVLVHLYYGVWRSTAEVRRKLRAQGVTGPPPSALYGNLPEMKEIELQAAAMASPPHHASAIVAHDYTSTLFPYFVKWRKQYGPLYTYSTGTRQHVYANNVDVVKDLSLSTNLHLGKPFYVTKKLAPVLGHSVIRSNGAVWALQRKIIAPEFFIHRVRAMAALMLHAAAPLLEKWEGIIGEEDGAAAAIEVDEDLRAFSADVISRACFGSSYEKGKHIFSKLRDLQKLVTQGNFLFGYSFSEIFFQGSKQKRIKKLEKEIESLIWETAQQRQEECSKTSLLEKDLLQLIMEAAMNDPNVGACNDSSKKFIVDNCKSIYFAGHESTAAAATWSLMLLALHPQWQDRIRSEFAQACPDGHPDTTLISQLKSVSMVVHETLRLYPPAAFVARETFAETRLGNVVVPKGVCLWTLIPMLHREVEIWGEDANEFKPERFANGIAKACKFPQAYVPFGAGPRLCLGKNFALVELKIIITLVVSKFRFSLSPEYRHSPSYRMIVEPANGVKIVFQRL | 531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 11538889 | 11543309 | - | Lag0041067.1 | Lac13g1271 | 592427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g1271 | 531 | Pfam | Cytochrome P450 | 91 | 524 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | Coils | Coil | 274 | 294 | - | - | |
| Lac13g1271 | 531 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 24 | 523 | IPR050665 | GO:0004497(PANTHER) | |
| Lac13g1271 | 531 | Gene3D | Cytochrome P450 | 32 | 531 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | E-class P450 group I signature | 330 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | E-class P450 group I signature | 469 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | E-class P450 group I signature | 479 | 502 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | E-class P450 group I signature | 100 | 119 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | E-class P450 group I signature | 392 | 410 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | E-class P450 group I signature | 350 | 376 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | E-class P450 group I signature | 219 | 237 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 472 | 481 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac13g1271 | 531 | SUPERFAMILY | Cytochrome P450 | 87 | 529 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | P450 superfamily signature | 470 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | P450 superfamily signature | 341 | 358 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | P450 superfamily signature | 479 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g1271 | 531 | PRINTS | P450 superfamily signature | 393 | 404 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2036 | Lac-Chr12:37429546 | Lac13g1271 | Lac-Chr13:11538889 | 6.40E-128 | dispersed | |
| Lac13g1271 | Lac-Chr13:11538889 | Lac8g2821 | Lac-Chr8:45447759 | 1.90E-82 | dispersed | |
| Lac13g1270 | Lac-Chr13:11504353 | Lac13g1271 | Lac-Chr13:11538889 | 1.70E-245 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g1271 | K20661 | - | csv:101216582 | 833.172 |