Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1271 ATGGGTGGGGCAGTAATTCCTGGTTTGGTGTCGGTTTTTCCGGCGGCGGTTGTGCTGGCGGTGCTGGCGGTGTTGGTCCATTTGTACTATGGGGTGTGGAGGAGCACGGCGGAGGTGAGGAGGAAGCTGCGAGCGCAGGGGGTGACCGGGCCGCCGCCGTCCGCTCTGTACGGAAACTTGCCGGAGATGAAGGAGATCGAGTTGCAGGCGGCGGCCATGGCTTCTCCGCCGCACCATGCGTCGGCGATTGTCGCTCATGATTACACCTCCACTCTCTTCCCTTATTTCGTCAAGTGGAGGAAGCAATACGGCCCATTATACACGTACTCGACAGGGACGAGGCAACATGTGTACGCCAACAATGTGGATGTGGTGAAGGATCTAAGCCTCTCCACCAATCTCCACTTGGGCAAGCCCTTCTACGTCACCAAGAAGCTCGCCCCCGTCCTCGGCCACAGCGTCATCAGATCCAACGGCGCCGTCTGGGCGCTGCAGCGCAAGATCATCGCCCCGGAGTTCTTCATCCACCGGGTCCGCGCCATGGCCGCCCTCATGCTCCACGCCGCCGCGCCCCTGCTCGAGAAGTGGGAGGGGATCATCGGAGAAGAAGACGGAGCGGCGGCGGCGATTGAGGTGGACGAGGATCTGAGAGCATTCTCGGCGGATGTGATTTCCAGGGCTTGCTTTGGGAGCTCCTATGAGAAGGGGAAGCACATCTTTTCAAAGCTTAGGGATCTTCAGAAGTTGGTTACCCAAGGCAACTTTCTCTTTGGATATTCTTTCAGTGAGATATTTTTTCAAGGAAGCAAACAGAAAAGAATAAAGAAGCTGGAGAAGGAGATCGAGTCATTAATATGGGAGACGGCTCAACAGCGGCAAGAAGAATGCTCGAAAACTTCGTTGTTGGAGAAGGATCTGTTGCAGCTGATAATGGAGGCTGCCATGAATGATCCAAATGTAGGAGCTTGCAATGACTCCTCCAAAAAGTTCATCGTCGACAATTGCAAGAGCATCTACTTCGCCGGCCATGAGTCCACTGCGGCTGCAGCCACCTGGTCCTTGATGCTCCTCGCCCTCCACCCTCAATGGCAAGATCGTATCCGCTCTGAGTTTGCTCAAGCTTGCCCCGATGGCCACCCCGACACGACTCTGATCTCTCAACTCAAATCGGTGAGTATGGTGGTTCACGAAACGTTGCGACTGTACCCACCAGCGGCATTTGTCGCGAGGGAGACATTTGCTGAGACACGATTGGGGAACGTGGTGGTTCCAAAGGGTGTCTGCTTATGGACTTTGATTCCGATGTTGCACAGAGAAGTTGAAATATGGGGAGAAGATGCGAATGAGTTCAAGCCAGAGCGATTCGCCAATGGCATAGCCAAGGCCTGCAAGTTCCCTCAGGCCTATGTGCCATTCGGGGCAGGTCCTCGACTATGCTTAGGGAAGAACTTTGCATTGGTTGAGTTGAAAATCATCATTACTCTTGTAGTTTCCAAGTTTAGATTCTCACTGTCTCCTGAGTATCGCCATTCTCCTTCTTATAGAATGATTGTGGAGCCTGCTAATGGTGTGAAGATTGTCTTCCAAAGGCTTTGA 1596 53.63 MGGAVIPGLVSVFPAAVVLAVLAVLVHLYYGVWRSTAEVRRKLRAQGVTGPPPSALYGNLPEMKEIELQAAAMASPPHHASAIVAHDYTSTLFPYFVKWRKQYGPLYTYSTGTRQHVYANNVDVVKDLSLSTNLHLGKPFYVTKKLAPVLGHSVIRSNGAVWALQRKIIAPEFFIHRVRAMAALMLHAAAPLLEKWEGIIGEEDGAAAAIEVDEDLRAFSADVISRACFGSSYEKGKHIFSKLRDLQKLVTQGNFLFGYSFSEIFFQGSKQKRIKKLEKEIESLIWETAQQRQEECSKTSLLEKDLLQLIMEAAMNDPNVGACNDSSKKFIVDNCKSIYFAGHESTAAAATWSLMLLALHPQWQDRIRSEFAQACPDGHPDTTLISQLKSVSMVVHETLRLYPPAAFVARETFAETRLGNVVVPKGVCLWTLIPMLHREVEIWGEDANEFKPERFANGIAKACKFPQAYVPFGAGPRLCLGKNFALVELKIIITLVVSKFRFSLSPEYRHSPSYRMIVEPANGVKIVFQRL 531
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 11538889 11543309 - Lag0041067.1 Lac13g1271 592427
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1271 531 Pfam Cytochrome P450 91 524 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 Coils Coil 274 294 - -
Lac13g1271 531 PANTHER CYTOCHROME P450 FAMILY MEMBER 24 523 IPR050665 GO:0004497(PANTHER)
Lac13g1271 531 Gene3D Cytochrome P450 32 531 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS E-class P450 group I signature 330 347 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS E-class P450 group I signature 469 479 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS E-class P450 group I signature 479 502 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS E-class P450 group I signature 100 119 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS E-class P450 group I signature 392 410 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS E-class P450 group I signature 350 376 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS E-class P450 group I signature 219 237 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 472 481 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac13g1271 531 SUPERFAMILY Cytochrome P450 87 529 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS P450 superfamily signature 470 479 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS P450 superfamily signature 341 358 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS P450 superfamily signature 479 490 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g1271 531 PRINTS P450 superfamily signature 393 404 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2036 Lac-Chr12:37429546 Lac13g1271 Lac-Chr13:11538889 6.40E-128 dispersed
Lac13g1271 Lac-Chr13:11538889 Lac8g2821 Lac-Chr8:45447759 1.90E-82 dispersed
Lac13g1270 Lac-Chr13:11504353 Lac13g1271 Lac-Chr13:11538889 1.70E-245 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1271 K20661 - csv:101216582 833.172