Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1298 ATGGTTTCCAGGTCCTACTCCAATTTACTCGAACTCGCCACCGGAGAATCGCCCTCCTTCGGCCGTATCAACCGCCAAATCCCGCGGATTATGACCGTCGCCGGCTTAATCTCCGACATCGACGACGACCCAACAGAGAGCGTCTCCTCGGAGCCGTCCTCCTCCTCCGCCCCTCGCGACCGGATTATCATTGTCGCCAATGAGCTCCCCATCAGAGCCCACCGGAAATCCGGCGGTGGCGCCGCCGCTTGGACTTTCAGTTGGGATGAAAATTCCCTTCTCCTCCAGCTGAAAGATGGGCTGGGAGATGATGATTTTGAGGTGTTCTATGTGGGTTGTCTCAAGGAAGATATTCACCCAAATGAACAAGATGAAGTCTCTCAAATACTTTTGGAGACTTTTAAATGTGTCCCAACATTTCTCACTCAAGATCTTTACACTAGGTACTACCATGGCTTCTGCAAGCAGCAGCTATGGCCTCTGTTTCATTACATGTTGCCTCTGTCGCCCGACCTCGGCGGTCGGTTTAATCGCCCGCTGTGGCAGGCTTATGTTTCTGTGAATAAGATCTTTGCTGATAGGATCATGGAAGTGATCAATCCTGAGGATGATTTTGTTTGGATTCATGATTATCATCTCATGGTGTTGCCTACTTTTTTGAGGAAGAGATTCAATAGGGTTAAGCTTGGATTCTTTTTGCATAGTCCATTCCCGTCGTCCGAGATATATCGAACGCTCCCGATCCGGGAGGAGCTCTTGCGAGCGCTCCTGAATTCAGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTATCTTGTTGTAGTCGAATGCTCGGTCTAACGTATGAGTCGAAACGGGGGTATATCGGGATAGAGTATTACGGTCGAACAATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGGCAGCTTCAATCTGTTTTGAGCCTTCAGAGGACTGAGGAGAAGGTTAGTGAGCTTATCAAGCAGTTTCGCGACCGGGATAGGATAATGTTGCTCGGTGTCGATGATATGGATATATTTAAGGGGATAAGTTTGAAGCTTTTGGCCATGGAGCAGTTGTTGATCACACACCCTGAGTGGCAGGGGAAAGTAGTATTGGTGCAGATTGCCAATCCAGCAAGAGGCCGAGGGAAAGATGTGAAAGAAGTCCAGGACGAGACGAAGGCGACTGTTAAGCGGATTAACGATATTTTCGGTCAACCCGGGTACGAGCCAGTTGTGTTGATTGAGGAGCCACTCAAATTCTATGAGAGAATTGCATATTATACCGTTGCCGAATGTTGTTTGGTCACCGCGGTTCGGGACGGTATGAATCTCATTCCATATGAGTACATTGTGAGTCGCCAAGGGAATGATAAGTTGGATAAACTCTTGGGGTGGGAATCATCAGCTCCAAAGAAGAGTATGTTGGTTATATCCGAGTTCATCGGGTGCTCTCCGTCCTTAAGCGGAGCAATTCGAGTTAATCCCTGGAATATTGATGCTGTAGCTGATGCAATGGAATGTGCATTGGAGATGGAAGATGCAGAGAAGCAGCTCCGCCATGAGAAGCATTTTAGATATGTGAGCACACACGATGTTGGGTATTGGGCTCGGAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGATCATGTGAGGCAGAGATGTTGGGGTATCGGGTTCGGTTTAAGCTTCCGCGTCGTGGCTCTTGATCCGAACTTCAGGAAGCTCGCGATGGAACACATAATTTCGACTTATAAGAGGACGAAATCCCGGGCTATTCTTTTGGACTATGATGGTACATTAATGCCTCAAGCTTCCATTGATAAGAGTCCTACTTCTAAATGCCTTGAAACTCTTAATACCTTGTGTCGAGATAAGAACAATACGGTATTCGTTGTGAGTGCGAAAAGTCGAAAGACGCTTGCTGAATGGTTTGCCTCTTGTGAGAATCTCGGCATTGCGGCCGAGCACGGATACTTTATCAGGCAAAAGCAAGATGAGGAATGGGAAGCCAGTTTACCAGTTGCCGATTGCTGTTGGAAGCAAATTGTGCAGCCAGTGATGAAACTCTACACTGAAACGACTGATGGATCGACCATCGAAGATCGAGAAACTGCGCTCGGATGGAGTTATGAAGATGCAGATCCGGATTTCGGTTCGTGTCAAGCTAAGGAGCTCTTCGATCATCTCGAAAGCGTCCTAGCCAACGAACCAGTTACTGTCAAAAGTGGACAGAACATTGTGGAAGTTAAACCACAGGGCGTCAGCAAGGGTCTCGTAGCCAAACGACTGCTCTCCGCGATGCAAGAGAAGGGGACCCCTGCAGATTTTGTTCTCTGCATTGGCGACGACAGATCAGACGAAGACATGTTCAAGGTGATCTCAAGTTCCATGGCAGGCCCATCGATAGCCCCCCGAGCCGAAATTTTTGCTTGTACGGTAGGGAAGAAACCGAGCAAAGCCAAGTACTACCTCGACGATCCATCAGAAATTGCAAGGTTGTTGCACGGTTTGGCCTCGGTGTCGAGGCAAAACGTAGCGCTCTATCCATCCCAAACCTGA 2583 47.89 MVSRSYSNLLELATGESPSFGRINRQIPRIMTVAGLISDIDDDPTESVSSEPSSSSAPRDRIIIVANELPIRAHRKSGGGAAAWTFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLTQDLYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLQRTEEKVSELIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKATVKRINDIFGQPGYEPVVLIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGWESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNIDAVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRQRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQASIDKSPTSKCLETLNTLCRDKNNTVFVVSAKSRKTLAEWFASCENLGIAAEHGYFIRQKQDEEWEASLPVADCCWKQIVQPVMKLYTETTDGSTIEDRETALGWSYEDADPDFGSCQAKELFDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSAMQEKGTPADFVLCIGDDRSDEDMFKVISSSMAGPSIAPRAEIFACTVGKKPSKAKYYLDDPSEIARLLHGLASVSRQNVALYPSQT 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11938465 11941540 - Lag0041094.1 Lac13g1298 592454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1298 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 848 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lac13g1298 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 597 714 - -
Lac13g1298 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 316 - -
Lac13g1298 860 NCBIfam trehalose-phosphatase 596 845 IPR003337 GO:0005992(InterPro)
Lac13g1298 860 FunFam Alpha,alpha-trehalose-phosphate synthase 318 535 - -
Lac13g1298 860 NCBIfam HAD-IIB family hydrolase 600 801 IPR006379 -
Lac13g1298 860 SUPERFAMILY HAD-like 598 845 IPR036412 -
Lac13g1298 860 Gene3D Glycogen Phosphorylase B; 54 317 - -
Lac13g1298 860 Gene3D Glycogen Phosphorylase B; 318 535 - -
Lac13g1298 860 Pfam Glycosyltransferase family 20 61 551 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac13g1298 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 554 - -
Lac13g1298 860 Pfam Trehalose-phosphatase 601 836 IPR003337 GO:0005992(InterPro)
Lac13g1298 860 CDD GT20_TPS 61 551 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac13g1298 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 727 857 - -
Lac13g1298 860 CDD HAD_TPP 599 837 - -
Lac13g1298 860 FunFam Trehalose-6-phosphate synthase 2 681 760 - -
Lac13g1298 860 Gene3D - 597 709 IPR023214 -
Lac13g1298 860 Gene3D - 727 855 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1001 Lac-Chr10:8040725 Lac13g1298 Lac-Chr13:11938465 2.30E-123 dispersed
Lac13g1298 Lac-Chr13:11938465 Lac5g0203 Lac-Chr5:1772768 0.00E+00 dispersed
Lac13g1298 Lac-Chr13:11938465 Lac12g0751 Lac-Chr12:7898140 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1298 K16055 - vvi:100252552 1489.17