Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1318 ATGCCAATGGCGAAAAACGATGACGAACTGAAGGTTCAGAGCTCCGGCAAGAGGCTGAAATGCTCTAAGCACGATGTCGAACAACTCGAAACTGAAGAAGAAGAAGAGGAGCAGGTGAGCGAGCTTCCATTGAAGCCTGGACTCTTCTTCTATCCAATGACTCCAACTTCCTTCGTGGTCTCCGATGCTCTCGAGCCCGATTTCCCCATCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATACCGCGCCGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAATATAGAGATCCTCGTGCACAAAGGCGCCACCCTTTGGTAGATCCGGTTGTTGTTTCTGAAATCAGAAGATGTCTGGAGGAAGGTGTTGAATTTCAAGGTGAACTTCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAACAGGTTACGGCTTGCACCTATACATGATGATGATGGTACTGTAACACACATTATAGGAATTCAAGTGTTTTCTGAGACAAAAATAGACCTTAATCGGTTGTCATATCCCGTTTTTAAAGAAACTTGCGCCAAAAAAGATAATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCATTTGGTCAACATAAAGAAATCTGTGGGATACTACAGCTTTCAGATGAAGTCTTGGCCCATAACATTCTATCACGCTTGACACCAAGAGATGTTGCATCTGTTGGGTCAGTTTGCCGAAGGATTCGTCAATTAACGAAGAATGAACATTTGAGGAAGATGGTATGTCAGAATGCATGGGGAACAGAAGTGACTGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTATGTTGGAGGAAACTGACAGTTGGGGAGCTGTGGAGCCTTTGCGTTGCAACTTTAGTGCTTGTGCTGCAGGTAATCGACTCGTATTATTTGGTGGGGAAGGAGTCAATATGCAGCCCATGGATGATACCTTCGTTCTCAATCTTGATGCGGCAAATCCCGAGTGGCGCAGATCAAGGATTGCTGAATGACGTGTTTGTACTCGATTTGGATGCTCAGCAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCCAAACTGGTTGTTTCAGGTGGATGCACAGATGCTGGGGTGCTTCTCAGTGACACATACTTATTGGACCTAACAACAGACAAGCCAACCTGGAGAGAGATTCCCACATCCGGGACTCCCCCATCTAGATTGGGACATTCTCTTTCAGTATATGGTCGGACAAAGATTCTAATGTTTGGTGGGCTTGCCAAGAGCGGACACTTACGCTTACGATCAGGCGAGGCATACACCATAGATTTAGAAGACGAAAAACCCCGGTGGAGGCAACTCGAGTGCAGTGCATTCACTGGCATAGGTGGTCAGAGTGCTGTAGTTCCTCCACCTAGACTCGATCACGTAGCAGTCAGCATGCCGTGTGGAAGGATTATCATTTTTGGAGGCTCCATTGCCGGGTTACATTCGCCTTCTCAACTATTCCTTTTGGATCCGGCCGAGGAGAAACCATCATGGAGGATTCTCAATGTTCCTGGACAACCACCTAAATTTGCTTGGGGCCACAGTACTTGTGTGGTTGGAGGGACAAGAGTTTTGGTATTGGGCGGCCACACTGGGGAAGAATGGATACTCAATGAATTGCACGAACTCTGCTTAGCTAGCAGGCAAGACTCAGATCTTTGA 1791 46.85 MPMAKNDDELKVQSSGKRLKCSKHDVEQLETEEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKETCAKKDNLSGKSAHLIDQSPFGQHKEICGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGTEVTGTLEQMTKKLGWGRLARELTTLEAVCWRKLTVGELWSLCVATLVLVLQVIDSYYLVGKESICSPWMIPSFSILMRQIPSGADQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEKPRWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12244406 12247222 + Lag0041114.1 Lac13g1318 592474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1318 596 Pfam PAS domain 64 165 IPR000014 -
Lac13g1318 596 SUPERFAMILY Kelch motif 348 589 IPR015915 GO:0005515(InterPro)
Lac13g1318 596 Gene3D - 345 459 IPR015915 GO:0005515(InterPro)
Lac13g1318 596 Gene3D - 460 590 IPR015915 GO:0005515(InterPro)
Lac13g1318 596 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 350 591 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Lac13g1318 596 SMART pac_2 129 170 IPR001610 -
Lac13g1318 596 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 165 IPR035965 -
Lac13g1318 596 Pfam F-box-like 223 260 IPR001810 GO:0005515(InterPro)
Lac13g1318 596 FunFam Adagio protein 1 48 176 - -
Lac13g1318 596 Coils Coil 19 39 - -
Lac13g1318 596 Pfam Kelch motif 501 548 IPR011498 GO:0005515(InterPro)
Lac13g1318 596 MobiDBLite consensus disorder prediction 1 37 - -
Lac13g1318 596 FunFam Putative LOV domain-containing protein 460 592 - -
Lac13g1318 596 SUPERFAMILY F-box domain 210 294 IPR036047 GO:0005515(InterPro)
Lac13g1318 596 CDD PAS 54 164 IPR000014 -
Lac13g1318 596 Pfam Galactose oxidase, central domain 380 433 - -
Lac13g1318 596 CDD F-box_AtADO-like 213 259 - -
Lac13g1318 596 Gene3D - 205 305 - -
Lac13g1318 596 ProSiteProfiles PAS repeat profile. 70 125 IPR000014 -
Lac13g1318 596 MobiDBLite consensus disorder prediction 1 28 - -
Lac13g1318 596 NCBIfam PAS domain S-box protein 69 164 IPR000014 -
Lac13g1318 596 Gene3D PAS domain 52 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1318 K12116 - - mtr:11417024 901.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1318 Lac-Chr13:12244406 Lac6g2319 Lac-Chr6:40618035 1.20E-194 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34