Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1329 ATGGCGGAGATTTCTGGCGATGGAGGTGGGTTTTTGCCGGAGGTTAGTAATGGACGGGCGGCGGATTCTTCTCAGGCTACGCCGACGCCGATTCCGGCACCGAATCCGACGCCGTTGACAGTGTCGGGATCTTTCAAGGAGGGGAAAAGCTCGTCGCGGCGGCGGACGTCGGTCAGGCCGAGTATGGACGCCGACGACTTCTTGAACTTGTTGCACGGCTCGGATCCGGTCAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTGCGAGATAAGGATAGAGAGCTCGGGGAAGCTCAGGCGAAGATCAAGGCTTTGAAGTTGTCCGAGCGGCTTAGAGAGAAGGCAGTTGAAGAGCTGACTGACGAACTATCAAGGGCTGAGGAGAAATTAAAGTTGACAGAATCTCTTCTTGAAAGCAAGAACCTTGAAATAAAGAAAATCAATGATGAGAAGAAGGCTTCAATGGCAGCTCAGTTTGCTGCTGAAGCCACTCTTAGGAGAGTACATGCTGCTCAAAAGGATGATGACATGCCTCCAATCGAAGCCATTCTTGCACCATTGGAGGCTGAGCTCAAGCTTGCACGACAGGAGATTGCTAAGCTTCAAGATGACAATAAAGCACTGGATCGTCTAACCAAATCAAAGGAAGCAGCTTTGATTGATGCTGAGAGGACTGTTCAAAGTGCCCTGGCCAAGGCCTCGATGGTGGATGATTTACAGAATAAAAATCAGGAGTTAATGAAACAGATAGAGATTTGCCAGGAAGAAAACAAAATCCTGGACAAGATGCACAGGCAGAAAGTTGCAGAGGTTGAAAAATTAACCCAAACAGTGAGGGAGCTGGAGGAGGCTGTTCTTGCTGGTGGTGCAGCGGCAAATGCTGTGAGGGATTATCAGCGCAAAGTTCAGGAGATGAATGAGGAAAGAAAAACTCTTGACAGAGAGTTGGCTCGTGCAAAGGTAACAGCCAACAGAGTGGCTGTAGTGGTAGCAAATGAATGGAAAGATGCAAATGACAAGGTTATGCCAGTAAAACAATGGCTTGAAGAACGAAGGTTTTTGCAGGGGGAAATGCAACAACTTCGTGATAAACTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAATTGAAAGAGAAGTATCAACTGCGACTTAGAGTTCTTGAAGAGAGTTTGAGAGGGTCTTCTGGTAGTAACAATCGAAGTACTCCAGAGGGGAGAAGTGTGAGCAATGGCCCCTCTCGTCGGCAATCTCTGGGTGGAGTTGACAACATCTCTAAATTAACTTCCAATGGATTTTTATCCAAAAGGACACCAGGCTCTCAGTTTAGATCTTTGTCCTCAAGCAGTAGCACAGTGTTGAAACATGCTAAAGGCACATCAAAATCATTTGATGGAGGCACGAGGTCATTGGACCGAGGAAAGGTATCATTGAATGGACTTCTACCCAGTTATTCATTCAATCAGTCCTGTGATGCAAGCAAGGACAGTGAAGTAAATAATGATTGGAAAAGTAATCCTGATGAAAAAGGAAATGAGTCTCCAACACTTGAGAGTGAAGACAGTGTTCCGGGCATGTTGTATGATTTACTTCAAAAGGAGGTTATAGCTTTGAGAAAAGCTGGTCATGAGAAAGATCAAAGCCTCAAGGATAAGGATGACGCCATCGAGATGTTAGCAAAGAAGGTAGAGACGCTGACCAAAGCAATGGAGGTTGAGGCAAAGAAGATGAGAAGGGAAGTGGCTGCCATGGAGAAGGAGGTAGCAGCTATGCGTGTGGAGAAAGAGCAGGAGAACAGGGCGAAGAGATTTGGTGGTAGCACCAAGGGCCCCGTGAGTGCAGCTCAACTACTTCCTGGAAGAAGCGTTGGGCGAGGTGGGTTGAATCGCAGCACTCAATGA 1905 47.19 MAEISGDGGGFLPEVSNGRAADSSQATPTPIPAPNPTPLTVSGSFKEGKSSSRRRTSVRPSMDADDFLNLLHGSDPVKVELNRLENEVRDKDRELGEAQAKIKALKLSERLREKAVEELTDELSRAEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALIDAERTVQSALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAITERTAKSEAQLKEKYQLRLRVLEESLRGSSGSNNRSTPEGRSVSNGPSRRQSLGGVDNISKLTSNGFLSKRTPGSQFRSLSSSSSTVLKHAKGTSKSFDGGTRSLDRGKVSLNGLLPSYSFNQSCDASKDSEVNNDWKSNPDEKGNESPTLESEDSVPGMLYDLLQKEVIALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEQENRAKRFGGSTKGPVSAAQLLPGRSVGRGGLNRSTQ 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12475910 12481663 + Lag0041125.1 Lac13g1329 592485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1329 634 MobiDBLite consensus disorder prediction 498 517 - -
Lac13g1329 634 MobiDBLite consensus disorder prediction 393 471 - -
Lac13g1329 634 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 56 606 IPR009768 GO:0007010(InterPro)|GO:0008017(InterPro)
Lac13g1329 634 MobiDBLite consensus disorder prediction 598 634 - -
Lac13g1329 634 Coils Coil 236 284 - -
Lac13g1329 634 Coils Coil 81 150 - -
Lac13g1329 634 Coils Coil 344 371 - -
Lac13g1329 634 MobiDBLite consensus disorder prediction 490 523 - -
Lac13g1329 634 Coils Coil 184 211 - -
Lac13g1329 634 MobiDBLite consensus disorder prediction 1 69 - -
Lac13g1329 634 Pfam Microtubule-associated protein 70 65 617 IPR009768 GO:0007010(InterPro)|GO:0008017(InterPro)
Lac13g1329 634 Coils Coil 561 602 - -
Lac13g1329 634 Coils Coil 295 322 - -
Lac13g1329 634 MobiDBLite consensus disorder prediction 393 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1329 K27854 - - csv:101212718 1095.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1083 Lac-Chr13:9228938 Lac13g1329 Lac-Chr13:12475910 2.60E-26 dispersed
Lac13g1329 Lac-Chr13:12475910 Lac1g3141 Lac-Chr1:51695156 1.80E-100 dispersed
Lac13g1329 Lac-Chr13:12475910 Lac7g1418 Lac-Chr7:14155652 1.60E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87