Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1337 ATGGCATTGGACGAGGACGTCGTGCTACGGGATGTCACCAATGCTGGTGTTGTCATCAGCGACCGCATTGCCAGAGAAGTTGCCACTCAACTTGATCTGGAGGAAGCGCTGGAAGCTTCCAGATACGCTAGCGATCCATATACAGCCCACCCCAGAGAGTGGCCTCCTCTGGTGGAAGTGGTGGATACTTGGGAGTTGCCTCGAGTACTTATAGAAAGATATAATGCTGCCGGTGGGGAAGGTACTGCCTTATGTGGAATATTTCCGGAAATACGAAGAGCTTGGGCATCTGTTGATAATTCTTTATTTCTTTGGCGATTTGACAAGTGGGATGGTCAATGTCCTGAGTTTAATGTGGAGGAGCAAGCCATCTGTGCCGTTGGCCTCACCAAATCCAAGCCTGGTGTTTTTGTTGAAGCAATACAGTATCTTTTAATTCTAGCTACGCCAGCGGAGTTGATTCTTGTAGGAGTATGCTCTTCTGGTGGTGCTGATGGTATAGATCCATATGCAGAGATTTCGCTCCAGCCTTTGCCAGAGTATACTATAACATCAGATGGAGTCACCATGACTTGCATCACTTGCACTGACAAAGGACGGATTTTTTTGGCTGGCCGTGATGGCAACATTTATGAGCTTCATTACACATCTGGTTCTGGTTGGCAAAAGCGATGTCGTAAAATTTGCCTTACTTCTGGTTTAGGAAGTGTGATATCGAGATGGGTTGTGCCAAATGTATTCAAGTTTGGAGCTGTTGATCCCATTGTTGAAATGATCTATGATAGTGAAAGATGCATTTTATATGCAAGAACTGAGGAAATGAAAGTTCAAGTATTTGTGTTGGGACCCAATGGTGATGGACCGCTTAAGAAAGTAGCGGAAGAAAGAAATCTGATCAATCAGAGAAATGGATCTTATGGAGGTAGACAGTCGAAAGGATCTAGAGTTATGAGTCGATCAGCAAAGCCATCTATTGTCTGCATTTCACTCTTATCTACGCTTGAATCAAAGTCGTTACACCTTCTAGCTGTTCTATCAGATGGTAGAAGGATGTATTTAACCACTTCACCATCAAATGGGAACTTGGGTGCATATAATTCCAGCCATCAAGTGCCAAGTTGTTTAAAAGTCGTGGCTACGAGGCCTTCTCCTCCTCTAAGTGTTGGTGGAGGACTTACATTTGGTGCCAACTCTGTTTCTGGTAGACCTCAAAATGAAGAGCTATTGCCAAAGGTCGAGGCAGCATTTTACTCTGCTGGGACTCTAGTCCTCTCTGATTCATCACCACCAACTGCATCTTCACTTCTCCTTGTGAGCAAGGATCCTGTAGCACAATCTTCCATATCTGGTACTTCGTCCTTAAATGCAAGGACTTCTTTTGCTTTAAGGGAAATTGTTTCTTCCTTTCCTGTTGAAGGCCGAATGCTTTCTGTAGCAGATGTTTTACCCTTATCAGATGCTGCCACTATGCAGTCCTTATATTCACAGATTGAATTTGGGGGGTCAGATTTCCCAGATGAGCATAGCGAAAAAGCAGTTGGAAAACTGTGGGCAAGAGGAGATCTATCTACCCAAAACATATTACCTAGGAGGAGACTTGTTGTATTCAGTACCATGGGCATGATGGAGATAGCTTTCAACAGGCCCGTGGATATTTTGAGAAGGTTGTTTGAGTCTAATTCGCCACGATCAATTTTAGAAGACTTTTTCAAAAGGTTTGGAGCTGGTGAAGCAGCTGCTATGTGTCTAATGTTGGCTTCAAGGATTGTCCACTGTGAAAGTCTCATAGCCAATGTTGTTGCAGACAAGGCAGGTGAAGCTTTTGAGGATCCTAGAATTGTTGGAATGCCTCAACTTGAAGGCAGTACTGGCTTGTCAAACACAGGAACTGCTGCTGCTGGGTTTAACATGGGTCAGGTTGCTCAGGAGGCTGTGCCAGTATTTTCAGGTGCACATGAAGGGCTCTGCTTATGCTCATCAAGATTGCTTTTTCCACTCTGGGAACTTCCTATCGTGGCTGTTAAAGGTATCTCAGATTCTACAAATACGTCACATGAGGGACTAATTGTATGTAGACTTTCTGCTGGAGCCATGCAAATCCTTGAGAACAAGCTCCGTGCTCTTGAGAAGTTTCTAAGGTCGAGAAGGAACCAGAGAAGAGGTCTTTATGGTTGTGTAGCTGGCTTAGGGGATGTTACAGGTTCTATTCTTTATGGTAGTGGTTCAGATCTCGTTTCAGGTGATCGGAATATGGTGAAAAGTATTTTTGGTACATACACAAGAAACATGGAGTCTGCTGGGACTGGAGCTTCTAATAAAAGGCAGAGATTACCTTACAGTCCTGCTGAGTTGGCTGCCATGGAGGTTAGGGCAATGGAATGTATAAGGCAACTGCTGCTTAGATCTGCTGAAGCTTTATTTTTGCTTCAGCTTCTTTCACAACACCACTTAACACGCTTGGTCCAGGGCTTGGATGATAGTTTTAGGCAGGCAATAGCTCAATTGACTTTTCATCAGCTTGTTTGTTCAGAAGAGGGTGATAATCTTGCTACACGACTTATATCTGCTCTAATGCAGTACTATACTGGTCCTGATGGCAGGGGCACTGTGGATGACATTAGTGGGAGATTAAGGGAAGGCTGTCCAAGCTACTTCAAAGAGTCTGACTACAAATTTTTCTTAGCGGTGGAGTGTCTGGAGAAAGCTGCTGTGACTCTTGACCCAATGGAGAAAGAGAATCTTGCTAGGGAAGCCTTTAATTGTTTGAGTAAAATTCCAGAGTCTGCAGATTTACGAACTGTATGCAAACGTTTTGAGGATTTGAGATTCTATGAAGCTGTGGTTCGTTTGCCTCTTCAGAAGGCTCAGGCTCTTGACCCTGCCGGCAATGCTTTTAATGATCAAATTGATTTGGCTGCTCGAGAACGCGCACTTTCTGAGCGTGAACAGTGCTATGAAATAATTATAAGTGCTCTACGTTCACTAAAAGGTGATGTCTCACCGAAGGAATTTGGGTCTCCCATGAAGCCTGCTGCTTCAAGATCCATTCCTGATATGGCATCACGTAGTAAATATATATGCCAGATTGTTCAGCTTGGAGTTCAGTCCCCTGACAAAATTTTCCATGATTACTTGTATCGATCTATGATTGATTTGGGGCTTGACAATGAATTGTTGGAATATGGAGGCCCAGATTTGGTACCTTTCCTACAAAATGCTGGGCGACATCCCATACAAGAGGTTCGAGCTGTCTCAGCTTTAACAGCTGGGGCTTCTTCAATTGGTCAGTCTGGAGCAGTCGGTGCATCAAATGAGGCAAAATTTTTTGATCTTTTGGCTCGATATTATGTTATGAAGCGGCAACATTTGCTTGCTGCTCATGTGCTACTAAGACTAGCTGGTAGACGCTCTTCTGATCCTGGGGATGTTCTTACTTTGGAGGAGAGGTGCCAATACTTGAGCAATGCAGTTCTACAAGCAAAAAACGCAAACAGTAGCAAGGGACTGGCAGGTTCTACCCCTGATACCTTAGACAATGGATTGCTTGAACAGCTTGAAGGGAAACTTGCCGTTCTTCGTTTCCAGATGAAAATTAAGGAGGAGCTGGAAGCTTTAGCTTCGAGAATAGAGGCCATGCCGAGTACATCTGATTCGGTCCAAAATGAAATGGTCCCAGATAACAATTTTGCTGCTAATTCCAATATTGCAAATACAGCTCGGCAAAAGGCCAAAGAGCTCTCATTGGAGTTAAAATCTATAACTCAGCTATATAATGAATATGCCGTTGCATTTGAGCTATGGGAGATATGTTTGGAAATGCTGTACTTTGCAAACTATTCTTCTGATGACAATACTAGTATTGTCAGAGAAACTTGGGCTCGACTAATTGACCAAGCTCTTTCTACGGGTGGCATTGCTGAAGCTTGTTCAGTATTAAAAAGAGTTGGCTTCCACATTTACCCTGGTGATGGAGCTGGACTACCTTTGGAGACTCTCTGTCTTCACCTTGAGAAGGCTGCATTGGAGAGATTGGATTCAGGTGTTGAATCTATTGGGAATGATGATGTTGCAAGAGCCCTTATTGCTGTTTGCAAAGGCGCAACTGAGCCAGTATTGAATGCTTATGATCAATTGTTGTTGAATGGTGCAATTCTTCCATCACCCAAACTGAGGTTGCGCCTTCTCCAATCTGTGTTAGTGGTACTCCATGAGTGGGCTATGTCCATCTCTTCACAGACTATGGGTAGAAGTTCAACTGCAGCATCTCTAGTTTTTGTCGGAAAATATTCTTTGGATCAAATAGCTATTGCCAATCAAGGTGTTCGGGACAGGATAGCCAGTGCTGCCAACAGATATATGACTGAGGTTCGTAGGTTAGCCCTTCCACAAAACCAAACCGAGGCTGTCTATCGAGGCTTTAAGGAGCTTGAAGAGTCACTAATACAAGGGAAGATTTTCATGGCTGAAGTGGCTTCTGTAACCCTGTACTTGATGCTGCAATCGATGAAAGTTTTGACCGTTGATGATGTCAGTTTTGCTGCACATCCTGCTGGAAAATGGCAGCCTTGGGTTCTGCCTTGCAGTGTGAGAGTCGGGCTCAATTTCCATTTGAAGCATGCTCTACATAAAAATGGACGAACGGCTCGGGGGCGTTGTAATGGTGAAGCGTTATGA 4674 43.99 MALDEDVVLRDVTNAGVVISDRIAREVATQLDLEEALEASRYASDPYTAHPREWPPLVEVVDTWELPRVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEFNVEEQAICAVGLTKSKPGVFVEAIQYLLILATPAELILVGVCSSGGADGIDPYAEISLQPLPEYTITSDGVTMTCITCTDKGRIFLAGRDGNIYELHYTSGSGWQKRCRKICLTSGLGSVISRWVVPNVFKFGAVDPIVEMIYDSERCILYARTEEMKVQVFVLGPNGDGPLKKVAEERNLINQRNGSYGGRQSKGSRVMSRSAKPSIVCISLLSTLESKSLHLLAVLSDGRRMYLTTSPSNGNLGAYNSSHQVPSCLKVVATRPSPPLSVGGGLTFGANSVSGRPQNEELLPKVEAAFYSAGTLVLSDSSPPTASSLLLVSKDPVAQSSISGTSSLNARTSFALREIVSSFPVEGRMLSVADVLPLSDAATMQSLYSQIEFGGSDFPDEHSEKAVGKLWARGDLSTQNILPRRRLVVFSTMGMMEIAFNRPVDILRRLFESNSPRSILEDFFKRFGAGEAAAMCLMLASRIVHCESLIANVVADKAGEAFEDPRIVGMPQLEGSTGLSNTGTAAAGFNMGQVAQEAVPVFSGAHEGLCLCSSRLLFPLWELPIVAVKGISDSTNTSHEGLIVCRLSAGAMQILENKLRALEKFLRSRRNQRRGLYGCVAGLGDVTGSILYGSGSDLVSGDRNMVKSIFGTYTRNMESAGTGASNKRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQLLSQHHLTRLVQGLDDSFRQAIAQLTFHQLVCSEEGDNLATRLISALMQYYTGPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLEKAAVTLDPMEKENLAREAFNCLSKIPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGNAFNDQIDLAARERALSEREQCYEIIISALRSLKGDVSPKEFGSPMKPAASRSIPDMASRSKYICQIVQLGVQSPDKIFHDYLYRSMIDLGLDNELLEYGGPDLVPFLQNAGRHPIQEVRAVSALTAGASSIGQSGAVGASNEAKFFDLLARYYVMKRQHLLAAHVLLRLAGRRSSDPGDVLTLEERCQYLSNAVLQAKNANSSKGLAGSTPDTLDNGLLEQLEGKLAVLRFQMKIKEELEALASRIEAMPSTSDSVQNEMVPDNNFAANSNIANTARQKAKELSLELKSITQLYNEYAVAFELWEICLEMLYFANYSSDDNTSIVRETWARLIDQALSTGGIAEACSVLKRVGFHIYPGDGAGLPLETLCLHLEKAALERLDSGVESIGNDDVARALIAVCKGATEPVLNAYDQLLLNGAILPSPKLRLRLLQSVLVVLHEWAMSISSQTMGRSSTAASLVFVGKYSLDQIAIANQGVRDRIASAANRYMTEVRRLALPQNQTEAVYRGFKELEESLIQGKIFMAEVASVTLYLMLQSMKVLTVDDVSFAAHPAGKWQPWVLPCSVRVGLNFHLKHALHKNGRTARGRCNGEAL 1557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12562954 12586231 + Lag0041133.1 Lac13g1337 592493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1337 1557 FunFam Nuclear pore complex protein NUP155 1055 1157 - -
Lac13g1337 1557 Gene3D - 1182 1447 IPR042538 -
Lac13g1337 1557 Pfam Nup133 N terminal like 54 496 IPR014908 -
Lac13g1337 1557 Coils Coil 698 718 - -
Lac13g1337 1557 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 649 1414 IPR007187 -
Lac13g1337 1557 Coils Coil 1236 1256 - -
Lac13g1337 1557 Coils Coil 1182 1202 - -
Lac13g1337 1557 FunFam Nuclear pore complex protein NUP155 892 1052 - -
Lac13g1337 1557 Gene3D Nucleoporin, helical domain, central subdomain 1055 1157 IPR042537 -
Lac13g1337 1557 Gene3D - 530 881 - -
Lac13g1337 1557 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 5 1480 IPR004870 GO:0000972(PANTHER)|GO:0005643(InterPro)|GO:0006405(PANTHER)|GO:0006606(PANTHER)|GO:0006913(InterPro)|GO:0017056(PANTHER)|GO:0017056(InterPro)|GO:0036228(PANTHER)|GO:0044611(PANTHER)
Lac13g1337 1557 FunFam Nuclear pore complex protein NUP155 1183 1420 - -
Lac13g1337 1557 Gene3D - 892 1051 IPR042533 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1337 K14312 - - csv:101212476 2674.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g496 . . . . . . . . Cmo04g01098 . Cma04g01023 . Car04g00958 . Sed06g0156 . . Bhi07g00387 Tan04g1515 Cmetu10g1305 Lac13g1337 . . . . . . . . . . . . . . . . . . Blo06g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01250 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34