Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1343 ATGCAGAGTCGAGATTTGCGTTTGAGAATCTGGAGTGGTCTCTTTGTCAACTACCTAGAAAGATTCTTTTGGAAGTGCCTTCCAAGGAATCTTAGATCCACAAAGCCATTTGTGATTAATTTGAAATCTCTAAGTTCAGATGACATGACCAATGGATTCTTCATTGAGGCTTGGAACATCCTGAACTGTGGGGAATGGAAGAAAAAGAAGAAAGAAGGCTTGTTATTGAAGCTTGACTTTGAGAAAGCTTATGATAAAAAGGATTGGTCCTATCTTGTCGCTATTCTTGAACTTAAAGTCTTTAGGGCAAGTGAGAGAAACATGTTGAAAGGCTTCCAGCTAGGTCAGAATGGGGTGGAGATTTCTAATATCCAGTATGCAAATGATGTGCTGATTTTCTTTCCAAATAATTTAGTTTTGGGTCTCCCTTTAGGTCATAATCCAAAAAACTCTTCGTTCTGGTCCCCTGTGGTGGAGAAAGTGAGGAAAAGATTAGCCTCTTGGAAGATGAGCTTTTTCTCTAAAGGTGCCAGAATGACCCTTATTCAATCTGTCTTGAGCGGGATCCCCGTCTACTTCTTCTCGCTGTTTAGGGCTCTTAGCGGTGTGTGTAGGGTTTTGGAGAGACTCATGAGGAACTTCTTATGGAAGGTGGTTGAGGAGGGGAGGAGTTCACATCTTGTTAGTTGGGAGGTGGTGGGGAAATCTATGAATAGTGGCAGGCTAGAATTAGGTGGGGTCAAGGGTAGGAATCCACGGAGAGAGATTGCTTTCGAGCTCCCTTCGTTTTTGGGCTTGGTTCATTTTCAGGTAGGGGATAGTAATAATACTTACTTTTGGGAGGACAAGTGGGTGGGGGATAATTTTCTCTACTCTAAATTTCCTAATCTATATCGCTTGTCCTCGATGAAAAGCCAATCGATTGTCGATGTTCTTAATCATAGAGGGAGCTCAATGTCCTTTTCGTTGGGTTTCTGTTGTCATTTGACCAATAGGGAAACGACGGAGGTCACCAATCTCTTATCTTTGATAGGGGATTGTCAGTTTAGGGAGGGAGGAAGGGATGTTCGTTGTTGGAGTCTTAGCCCTGTTGAGGGATTCTCTTGTCGGTCTCTTTTCGGTGGTTTCTCAACCCTTTCTTCCCATAGTGAGTTGATCTTTTCTATTCTTTGGAGAGTAAAAATCCTGAGGAAGGTAAGGTTCTTTATTTGGCAAGTCATCCACGAAAGAGTTAATACAATCGATAAGCTATCGAGGAAGATGACTTCGTTGGTTGGTCCGTTTTGTTGCATTTTATGTCGAAAGGCGGAGGAAAATTTGGACCATATTTTATGGAACTACGAATTTGCCTGTACGATGTGGGGTTTCTTTCATGATGCGTTCAGGATACAAGTGAGACGATTCATAGACTATATGGAGATGATCCAGGAGTTCCTTCTCCATCCGTTGTTTCGCGATAAGAGGAGGTTTTTATGGTTAGCAGGGGTGTGTGCTGTTTTATGGGGTCTTTGGGGCGAGAGAAATAATAGGATTTTTCGTGGTCTTAAGAGAGGTCCTTCCAATCTGAAAAGCTTCAAAGGAAATTTCCGTGTTGGACCATATCCCCTTCGTTTTGCTGCTTATGTAGGACAGCCATTGGCCCATTGCTGTTTTGCTAGAGATTCTTGGGCTTTTGTGCAGAATGAGTTTGGTTTGATGTTCTGCCTCCCAGAGAAGGTGGACAGTTTCCTTCAAAAATCTTTTGGAGGGCCTCTTTTGGAAGACAAGGGTAGAGTCGCAGCTAAGGCCTTCTTTGTGGTGGTCTTGGTCTATTTGGATGATATACTTGACAGCCTTCTTCAAGCCCTATCTGATCCTTCTGATGATGTGGTGCTCCTTGTTTTCGAGGTTCATGCTTGCATAGCAGAAGACCAGCAACATTTTCGCCAACTTGTTGTCTTCCTAGTGCATAATTTTCGGATCAATATTTCTCTTCTGGAGAAGCGTGGTGCATTGATAATACGCCGATTGTGTGTACTTTTAAATGCTGAACGGGTCTACCGTGAGCTTTCTACAATATTGGAAGGAGAATCAGATCTGGATTTCGCTTCTATTATGGTTCAGGCTCTCAATTTGATTTTGCTGACTTCCTCTGAGTTGTCTGATCTTCGAGATCTATTAAAGAAATCATTGGTGTATCCAGCTGGGAAGGACCTTTTTGTTTCTTTATATGCATCATGGTGTCATTCCCCGATGGCTATTATAAGTCTTTGCTTATTAGCACAGTCATACCAGCATGCTAGTGCGGTGATTCAGTCTTTGGTGGAGGAAGATATTAATGTGAAATTTTTAGTTCAGCTGGATAAATTGATTCGCCTCCTGGAGACTCCCGTCTTTGCTTATCTCAGATTGCAGCTTCTTGAACCTGGAAAATATATATATCTGCTAAAAGCTTTATACGGTCTTCTAATGTTACTTCCCCAGGGACTCGACCATTTCTGCCTTAGATGTTGCCGCCAACTCATGTTGAGTCTACCTGGGTATGCTTTGCCTTGCGTTTGCCTGTATCCTTGCACTAGCCAGTCTGCTCGATTGCAAAGTGCCGCCTTTAAGATACTACGAACGCGTCTCAAAACAGTGCCTCCATACTCGTTTAGTGGTGAGCACTTCAAACAATTGTCATCCGGGAGCTCCTACTCCATAATGCATCACATGTCTGGGATGAATTTGAATGAAGATGGTGATGTAAGCCAGGATGCCGGGAACTCTCGTAATGGAATTAACTTTGCTGCTAGGCTACAACAGTTCGAGCATATGCAGTGTGCACATCGCTTACATGCAAAAGAGCAGGCACTGTCATGGACGAGTACTCCACCTCAGCCAATGGTTACGGATGTTGATATCCCAGAAGAAACAAGACGGTCAGCCTCAGCTGCAGTAGCAGAGACAAATAGGCCTTCTTCAAGATCATCAAGGAGAGGGCCTGGGCAATTACAGTTGTGA 2982 43.33 MQSRDLRLRIWSGLFVNYLERFFWKCLPRNLRSTKPFVINLKSLSSDDMTNGFFIEAWNILNCGEWKKKKKEGLLLKLDFEKAYDKKDWSYLVAILELKVFRASERNMLKGFQLGQNGVEISNIQYANDVLIFFPNNLVLGLPLGHNPKNSSFWSPVVEKVRKRLASWKMSFFSKGARMTLIQSVLSGIPVYFFSLFRALSGVCRVLERLMRNFLWKVVEEGRSSHLVSWEVVGKSMNSGRLELGGVKGRNPRREIAFELPSFLGLVHFQVGDSNNTYFWEDKWVGDNFLYSKFPNLYRLSSMKSQSIVDVLNHRGSSMSFSLGFCCHLTNRETTEVTNLLSLIGDCQFREGGRDVRCWSLSPVEGFSCRSLFGGFSTLSSHSELIFSILWRVKILRKVRFFIWQVIHERVNTIDKLSRKMTSLVGPFCCILCRKAEENLDHILWNYEFACTMWGFFHDAFRIQVRRFIDYMEMIQEFLLHPLFRDKRRFLWLAGVCAVLWGLWGERNNRIFRGLKRGPSNLKSFKGNFRVGPYPLRFAAYVGQPLAHCCFARDSWAFVQNEFGLMFCLPEKVDSFLQKSFGGPLLEDKGRVAAKAFFVVVLVYLDDILDSLLQALSDPSDDVVLLVFEVHACIAEDQQHFRQLVVFLVHNFRINISLLEKRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSSELSDLRDLLKKSLVYPAGKDLFVSLYASWCHSPMAIISLCLLAQSYQHASAVIQSLVEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKYIYLLKALYGLLMLLPQGLDHFCLRCCRQLMLSLPGYALPCVCLYPCTSQSARLQSAAFKILRTRLKTVPPYSFSGEHFKQLSSGSSYSIMHHMSGMNLNEDGDVSQDAGNSRNGINFAARLQQFEHMQCAHRLHAKEQALSWTSTPPQPMVTDVDIPEETRRSASAAVAETNRPSSRSSRRGPGQLQL 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12682022 12692919 + Lag0041139.1 Lac13g1343 592499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1343 993 MobiDBLite consensus disorder prediction 970 993 - -
Lac13g1343 993 Pfam Vacuolar protein 14 C-terminal Fig4p binding 658 825 IPR021841 -
Lac13g1343 993 MobiDBLite consensus disorder prediction 945 993 - -
Lac13g1343 993 PANTHER TAX1 BINDING PROTEIN-RELATED 601 946 IPR026825 GO:0000306(PANTHER)|GO:0006661(PANTHER)|GO:0006661(InterPro)|GO:0010008(PANTHER)|GO:0070772(PANTHER)|GO:0070772(InterPro)
Lac13g1343 993 Pfam zinc-binding in reverse transcriptase 367 454 IPR026960 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1343 K15305 - - csv:101214803 548.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1343 Lac-Chr13:12682022 Lac4g0732 Lac-Chr4:18227616 6.50E-68 dispersed
Lac5g0015 Lac-Chr5:183421 Lac13g1343 Lac-Chr13:12682022 1.90E-20 dispersed
Lac8g2024 Lac-Chr8:38709968 Lac13g1343 Lac-Chr13:12682022 4.90E-17 dispersed
Lac13g1341 Lac-Chr13:12644460 Lac13g1343 Lac-Chr13:12682022 0.00E+00 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g493 Blo01g00771 Blo16g00753 Bda01g01796 Bda11g00185 Bpe13g01008 . . . Cmo04g01097 . Cma04g01022 Cma04g00076 Car04g00956 Car04g00072 Sed06g0157 . . Bhi07g00384 Tan04g1517 Cmetu10g0436 Lac13g1343 . . . Cla07g00543 Cam07g0582 Cec07g0645 Cco07g0610 Clacu07g0585 Cmu07g0620 Cre07g0956 . . Cone6ag0363 Cone9ag0394 Lsi04g01105 . . Cme10g01616 . . . Bda11g00185 . . Bma01g00488 Bma06g01130 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003068 2 1 2 2 1 1 3 1 1 0 1 1 2 2 1 3 1 4 2 1 1 2 1 3 1 1 1 5 3 1 51