Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1359 ATGGCCGAACAGTCGTCGACTCTCTCCGGAAGCGTTGGTGCACCGAACAGTGAGAACGTGCTGCAGAAACACGTGGCGTTCTTCGACAGGAACCAGGACGGCGTCGTTTATCCCTGGGAAACCTTCAAGGGCTTCCGAGCAATTGGGGCCAATTTTCTTTTGTCCTCCGTCGCTGCTTTTTTCATTAACGTTGGACTCAGCTCAAAAACCCGACCGGGGAAATTTCCTAATTTTATGTTCCCAATTGAGATAAAGAACATTCAACTTGCCAAACATGGAAGTGATTCTGGTGTATATGATTCTGAGGGAAGGTTTGTTGCTTCAAAATTTGAAGAAATTTTCAAGAAACATGCACTGACCCATCATAATGCCTTGACAGAGAAAGAGCTTCAAGCTTTGCTCAAGGCAAATAGAGAGCCCAAAGACTATTCAGGATGGTTTGCTGCATGGACAGAATGGACAGTTCTATACAACCTTTGCAAAGATGAGAATGGTTTACTAAAAAAGGAAACTGTGAAGGCTGTTTATGATGGAAGCTTATTTGAACATATGGAGAAAGAGAGAGCATCAAAAAAGAAGAAATGA 585 43.08 MAEQSSTLSGSVGAPNSENVLQKHVAFFDRNQDGVVYPWETFKGFRAIGANFLLSSVAAFFINVGLSSKTRPGKFPNFMFPIEIKNIQLAKHGSDSGVYDSEGRFVASKFEEIFKKHALTHHNALTEKELQALLKANREPKDYSGWFAAWTEWTVLYNLCKDENGLLKKETVKAVYDGSLFEHMEKERASKKKK 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12958002 12963020 + Lag0041155.1 Lac13g1359 592515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1359 194 PANTHER PEROXYGENASE 3-RELATED 15 192 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
Lac13g1359 194 Pfam Caleosin related protein 18 184 IPR007736 -
Lac13g1359 194 SUPERFAMILY EF-hand 19 137 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1359 K17991 - - csv:101213829 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2124 Lac-Chr12:38400761 Lac13g1359 Lac-Chr13:12958002 3.50E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g486 . . Bda01g01800 . Bpe13g01012 Bpe10g00979 . . . . Cma04g01019 Cma04g00072 Car04g00954 Car04g00068 Sed06g0164 . . Bhi07g00379 Tan04g1526 Cmetu10g1601 Lac13g1359 Hepe01g0573 . . Cla07g00554 Cam07g0587 Cec07g0650 Cco07g0621 Clacu07g0590 Cmu07g0625 Cre07g0964 . . . . Lsi04g01109 . . Cme10g01608 . . . . . Bpe02g01974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g1359 . 20 194 Pollen Coat Proteome AT1G23240 57.1 3.0e-58 222.6
Lac13g1359 . 20 194 Pollen Coat Proteome AT1G23240 57.1 3.0e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36