Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1400 ATGAGACCATTCAGATTCGGTTCCTCAAGAGCTAGCCAGGGCGAGGAGGATTTGGAGCAGATTGCTGCTAAGGAACAGAAGGTTATTCCGTTCGAAACCTTAGTTGAAGCTACCAACAATTTTCATCAAAATCACAAGCTCGGCGAAGGCGGTTTTGGTCCGGTTTACAAGGGGAAGTTGAAAGATGGAAGAGTGATTGCAGTTAAGAAGTTATCGCATTATTCGAAACAAGGGAGAAGGGAGTTTATGACCGAGGCCAAGTTGTTGGCTCGTGTGCAGCACAGAAATGTCGTTAATTTGTTGGGATACTGTGTGCATGGTTCAGAGAAACTTCTGGTTTACGAATACGTTATGAATGAGAGCCTCGACAAGCTTCTCTTTAAATCCAACAGACGAGAAGAACTTGATTGGAAGAGGAGGTATGAAATAATCTTTGGCATAGCACGAGGCTTGCAATATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGACATTAAGGCCAGTAACATTTTGTTGGACGACAAATGGGTCCCGAAGATTGCAGATTTCGGCATGGCCCGTCTCTTCCCCGAAGATCAAACTCATGTCAATACTCGTGTTGCGGGTACAAATGGATATATGGCTCCCGAATATGTAATGCACGGGCATCTATCAGCCAAGGCAGATGTTTTTAGCTTTGGTGTTTTGGTTTTGGAACTCATCAGCGGCCAACGTAATTCATCTTTTAGTTCATTTGTGGATGCCGAGAACCTACTTGATTGGGCTTACAAGCTATACAAGAAAGGCAGGAGCTTGGAGATCATGGACCCAACATTAGCATCATCAGCTGTTCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTCTGCACACAAGGCGATCCACAACTACGGCCGACCATGCCACGTGTAGTTTTGATCCTTTCAAAGAGACCTGGTACTTTGGAGGAACCGACGAGACCAGGAATACCCGGTTCTCGCTATAGAAGATCTCGTAGAACAAGTGCATCATCCTCCAATGCAGGAACCTCTGGTGCATCTTATACCTATGCTTCAACAACCAATACCATTACTGGAACTATAACCCCAACTGCAACCGCAAACGCAACCGAAATCGCTTCTGGTTCTTCTACAGTTAGTCGAGGACACGATACTCGTGGGAAACGTCCCATGGAAGAAGGTTAG 1194 45.14 MRPFRFGSSRASQGEEDLEQIAAKEQKVIPFETLVEATNNFHQNHKLGEGGFGPVYKGKLKDGRVIAVKKLSHYSKQGRREFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVMNESLDKLLFKSNRREELDWKRRYEIIFGIARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSSFSSFVDAENLLDWAYKLYKKGRSLEIMDPTLASSAVPDQVTMCIQIGLLCTQGDPQLRPTMPRVVLILSKRPGTLEEPTRPGIPGSRYRRSRRTSASSSNAGTSGASYTYASTTNTITGTITPTATANATEIASGSSTVSRGHDTRGKRPMEEG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13574978 13579383 + Lag0041196.1 Lac13g1400 592556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1400 397 CDD STKc_IRAK 47 313 - -
Lac13g1400 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g1400 397 MobiDBLite consensus disorder prediction 315 353 - -
Lac13g1400 397 SMART serkin_6 41 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1400 397 Gene3D Phosphorylase Kinase; domain 1 6 116 - -
Lac13g1400 397 MobiDBLite consensus disorder prediction 333 353 - -
Lac13g1400 397 SUPERFAMILY Protein kinase-like (PK-like) 25 311 IPR011009 -
Lac13g1400 397 Pfam Protein tyrosine and serine/threonine kinase 42 308 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g1400 397 MobiDBLite consensus disorder prediction 371 397 - -
Lac13g1400 397 FunFam Cysteine-rich receptor-like protein kinase 10 118 323 - -
Lac13g1400 397 FunFam Cysteine-rich receptor-like protein kinase 10 5 116 - -
Lac13g1400 397 ProSiteProfiles Protein kinase domain profile. 41 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g1400 397 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 21 346 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lac13g1400 397 Gene3D Transferase(Phosphotransferase) domain 1 117 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1400 Lac-Chr13:13574978 Lac10g0745 Lac-Chr10:5774095 8.50E-88 dispersed
Lac13g1400 Lac-Chr13:13574978 Lac10g0241 Lac-Chr10:1882042 1.10E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85867 PF07714 PK_Tyr_Ser-Thr 7.00E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1400 - - - 0.0