Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g1421 ATGAAATCTCATCTCAAAAAGTTCAAGGAGAAAAAGAAGAATTCAAGACCATGCGAAGATTTTGAAATGAGCCACAATGGGACAGGATTTCTTCGAATTCGCCTGTTGCGAGGCAATAATCTCGCCATTCGCGATGCTCCCACCCGCAGCAGCGATCCCTACGTTGTCATCACCACCGCTCACCAGAAATTCAAATCTCGCGTGATGAAAAAGGACTGCAATCCAGTATGGAACGAGGAATTCACACTTTCGATTACCGATATCAACACACCAATCAAATTAGCAGTGTTCGACAAAGATAGGTTCACGAAAGACGACGGAATGGGGGATGCAGAGATCGACATAAATCCATACATAGAGTGTTTGAATATGGGATTAGAGAATCTGCCAAATGGGTGTGTGGTGAAAAGGATTCAACCAAGCAGATCAAACTGCCTTGCAGATGAGAGCTCCTGTGTTTGGAACGATGGCAAGATCACCCAAGACATGGCTCTCCGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAGATTCAGTTGTCCAATGTTTCTGCGATCAAAGGCCTAAGAACCTACTCTTTAGCCTGA 591 44.16 MKSHLKKFKEKKKNSRPCEDFEMSHNGTGFLRIRLLRGNNLAIRDAPTRSSDPYVVITTAHQKFKSRVMKKDCNPVWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDINPYIECLNMGLENLPNGCVVKRIQPSRSNCLADESSCVWNDGKITQDMALRLQNVECGEIMIQIQLSNVSAIKGLRTYSLA 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13855316 13856774 - Lag0041217.1 Lac13g1421 592577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g1421 196 Pfam C2 domain 31 117 IPR000008 -
Lac13g1421 196 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 28 186 IPR044562 -
Lac13g1421 196 Gene3D C2 domain 26 189 IPR035892 -
Lac13g1421 196 SMART C2_3c 30 127 IPR000008 -
Lac13g1421 196 ProSiteProfiles C2 domain profile. 11 131 IPR000008 -
Lac13g1421 196 PRINTS C2 domain signature 92 100 IPR000008 -
Lac13g1421 196 PRINTS C2 domain signature 71 84 IPR000008 -
Lac13g1421 196 PRINTS C2 domain signature 47 59 IPR000008 -
Lac13g1421 196 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 26 125 IPR035892 -
Lac13g1421 196 CDD C2_ArfGAP 29 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1421 Lac-Chr13:13855316 Lac8g1626 Lac-Chr8:34247575 5.90E-58 dispersed
Lac13g1421 Lac-Chr13:13855316 Lac10g0291 Lac-Chr10:2220391 1.80E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g1421 - - - 0.0